View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_low_22 (Length: 321)
Name: NF8185_low_22
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 5481101 - 5481380
Alignment:
| Q |
20 |
aacaaagagacaaataaaccaaaaatctacttgccattttgttctatgtatatccattcgtcaaaagctcataatcacaaatttgaaaccatctaatatc |
119 |
Q |
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| T |
5481101 |
aacaaagagacaaataaaccaaaaagctacttgccatcttgttctatgtatatccattcatcaaaagctcgtaatcaccaatttgaaaccatctgatatc |
5481200 |
T |
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| Q |
120 |
ctctggtggggtgggacgatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaaga |
219 |
Q |
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| T |
5481201 |
ctctggtgggatg-----atggcaagcacaaaaatcatcagtgtacatattgttattcctctcttcttcctttttgcatcaactcaatgtgaagttaaaa |
5481295 |
T |
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| Q |
220 |
gccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattg |
304 |
Q |
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| T |
5481296 |
gccttaatgttagcactctttgcattaaggaagagagaatggcactccttaacgtcaaaaaagatctcaatgatccttacaattg |
5481380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 304
Target Start/End: Original strand, 5475994 - 5476293
Alignment:
| Q |
3 |
gttctgtagaaaaatataacaaagagacaaataaaccaaaaatc-tacttgccattttgttctatgtata--tccattcgtcaaaagctcataatcacaa |
99 |
Q |
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| T |
5475994 |
gttctgtagaaaaatataacaaagagacaaataaaccaaaaagcataactgccatttggttctatataaacatccattcatcaaaagctcattctggtaa |
5476093 |
T |
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| Q |
100 |
atttgaaaccatctaatatcctctggtggggtgggacgatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatc |
199 |
Q |
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| T |
5476094 |
atttaaaaccaactgatatcctctggtgggatg-----atggcaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatc |
5476188 |
T |
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| Q |
200 |
aactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttcc |
299 |
Q |
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| T |
5476189 |
aactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttcc |
5476288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 137 - 304
Target Start/End: Original strand, 5466460 - 5466627
Alignment:
| Q |
137 |
gatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcact |
236 |
Q |
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| T |
5466460 |
gatggcaagcacaagaatcgtctttggatattatgttattgctctcctctttctttttgcatcaactcagtgtgtagttatgagccttgatgttagcact |
5466559 |
T |
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| Q |
237 |
ctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattg |
304 |
Q |
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| T |
5466560 |
ctttgcattaaagaagagagggtggcactccttaacataaaaaaagatctgaacgatccttccaattg |
5466627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 169 - 304
Target Start/End: Original strand, 5495061 - 5495196
Alignment:
| Q |
169 |
ttgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactcct |
268 |
Q |
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|||| ||||| |||||||| |||||||||||||| |||| || ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5495061 |
ttgtcatttccctcttctttctttttgcatcaacccaatatgtagtgagtagcaataatgttagcactctttgcattaaggaagagagagtggcactcct |
5495160 |
T |
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| Q |
269 |
taacatcaaaaaagatctcaatgatccttccaattg |
304 |
Q |
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||| ||||||||||||||||| ||||| |||||||| |
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| T |
5495161 |
taaaatcaaaaaagatctcaaagatccatccaattg |
5495196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 5484144 - 5484229
Alignment:
| Q |
219 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattg |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |
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| T |
5484144 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaatagatctcaaagatccatccaattg |
5484229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 5489329 - 5489414
Alignment:
| Q |
219 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattg |
304 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
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| T |
5489329 |
agccttaatgttagtactctttgcattaaggaagagagagtggcactccttaaaatcaaaaaagatctcaaggatccttcaaattg |
5489414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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