View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_low_25 (Length: 287)
Name: NF8185_low_25
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 24991386 - 24991124
Alignment:
| Q |
16 |
gttgcatccaacatcattttggtcaccagccaattcaaaaacatgaaattgagaattcatacataaatgtctaacacacattgttgactttgagttcgaa |
115 |
Q |
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| T |
24991386 |
gttgcatccaacatcattttggtcaccagccaattcaaaaacatgaaattgagaattcatacataaatgtctaacacacattgttgactttgagttcgaa |
24991287 |
T |
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| Q |
116 |
gatccttcaaacaatgatttatttgtatctttc-aaaagactctaaaaattttatgcttcttcatttggagattcatttgatttaacatcattttgcaac |
214 |
Q |
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| T |
24991286 |
gatccttcaaacaatgatttaattgtatctttcaaaaagactctaaaaaatttatgcttcttcatttggagattcatttgatttaacatcattttgcaac |
24991187 |
T |
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| Q |
215 |
tcatcatattcgacatctaataatgcattaactccaagagcatctactatcggattattcatc |
277 |
Q |
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| T |
24991186 |
tcatcatattcgacatctaataatgcattaactccaagagcatctactatcggattattcatc |
24991124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 20626011 - 20625962
Alignment:
| Q |
214 |
ctcatcatattcgacatctaataatgcattaactccaagagcatctacta |
263 |
Q |
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| T |
20626011 |
ctcatcatattcagcatctaatcatgcattaactccaagagcatttacta |
20625962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 265
Target Start/End: Original strand, 31391840 - 31391980
Alignment:
| Q |
125 |
aacaatgatttatttgtatctttcaaaagactctaaaaattttatgcttcttcatttggagattcatttgatttaacatcattttgcaactcatcatatt |
224 |
Q |
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| T |
31391840 |
aacaatggtttatttgtttctttcaaaatattataaaatttctgggcctcttcatttgggggttcatctacctcgacatcatcctgcacctcatcatatt |
31391939 |
T |
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| Q |
225 |
cgacatctaataatgcattaactccaagagcatctactatc |
265 |
Q |
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| T |
31391940 |
cagcatctaatccagcattaactccaagagcatccactatc |
31391980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 265
Target Start/End: Complemental strand, 41074872 - 41074732
Alignment:
| Q |
125 |
aacaatgatttatttgtatctttcaaaagactctaaaaattttatgcttcttcatttggagattcatttgatttaacatcattttgcaactcatcatatt |
224 |
Q |
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| T |
41074872 |
aacaatggtttatttgtttctttcaaaatattataaaatttatgggcctcttcatttgggggttcatctacctcgacatcatcctgcacctcatcatatt |
41074773 |
T |
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| Q |
225 |
cgacatctaataatgcattaactccaagagcatctactatc |
265 |
Q |
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| T |
41074772 |
cagcatctaatccagcattaactccaagagcatccactatc |
41074732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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