View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_low_28 (Length: 278)
Name: NF8185_low_28
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 47319941 - 47320175
Alignment:
| Q |
19 |
ggagttgtttaaagaccataaagatttacttttgggaatcaacacttggttgccagagggacacaaaatctcacttccattggatggtgatgaacaacaa |
118 |
Q |
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| T |
47319941 |
ggagttgtttaaagaccataaagatttacttttgggactcaacacttggttgccagagggacacaaaatctcacttccattggatggtgatgaacaacaa |
47320040 |
T |
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| Q |
119 |
ggtgatgatggattagagttgaaatatgaacttcaagttgatga------agcggcactcaaagatgaagagaaagatgacgaacaataacaagtttgac |
212 |
Q |
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| T |
47320041 |
ggtgatgatggattagagttgaaatatgaacttcaagttgatgaagcggcagcggcactcaaagatgaagagaaagatgacgaacaataacaagtttgac |
47320140 |
T |
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| Q |
213 |
tacaatcctgcatgtagcaattcctagtttgatct |
247 |
Q |
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| T |
47320141 |
tacaatcctgcatgtagcaattcctagtttgatct |
47320175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 47316476 - 47316605
Alignment:
| Q |
19 |
ggagttgtttaaagaccataaagatttacttttgggaatcaacacttggttgccagagggacacaaaatctcacttccattggatggtgat-gaacaaca |
117 |
Q |
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| T |
47316476 |
ggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattggatggtgatagaacaaca |
47316575 |
T |
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| Q |
118 |
aggtgatgatggattagagttgaaatatga |
147 |
Q |
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| T |
47316576 |
aggtgatgatggattagagttgaaagatga |
47316605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 47314698 - 47314765
Alignment:
| Q |
41 |
gatttacttttgggaatcaacacttggttgccagagggacacaaaatctcacttccattggatggtga |
108 |
Q |
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| T |
47314698 |
gatttacttttgggactcaacactttcttgccaccgggacacaaaatctcatttccattgggtggtga |
47314765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 47316597 - 47316662
Alignment:
| Q |
184 |
gaaagatgacgaacaataacaagtttgactacaatcctgcatgtagcaattcctagtttgatctat |
249 |
Q |
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| T |
47316597 |
gaaagatgatgaacaataataagtttgattacaatcgtgcgtatagaaattcctagtttgatctat |
47316662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 47320180 - 47320217
Alignment:
| Q |
231 |
aattcctagtttgatctatctgttatgtgtcaatttca |
268 |
Q |
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| T |
47320180 |
aattcctagtttgatctatctgttatgtgtcaatttca |
47320217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 47307125 - 47307166
Alignment:
| Q |
84 |
aaatctcacttccattggatggtgatgaacaacaaggtgatg |
125 |
Q |
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| T |
47307125 |
aaatctcacttccattggatgatgatgaacaacgaggtgatg |
47307166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 47311272 - 47311332
Alignment:
| Q |
144 |
atgaacttcaagttgatgaagcggcactcaaagatgaagagaaagatgacgaacaataaca |
204 |
Q |
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| T |
47311272 |
atgaacttcaaggtgatggagtggcactcaaagatgagcagaaaaatgatgaagaataaca |
47311332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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