View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_low_32 (Length: 249)
Name: NF8185_low_32
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 11323489 - 11323249
Alignment:
| Q |
1 |
gcaatgtcatcgtacatgaaaacaacgatgttttcgtctttaagaccgccnnnnnnnaatatttgataggcatggcaaatatccgcttggtgcctataat |
100 |
Q |
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| T |
11323489 |
gcaatgtcatcgtacatgaaaacaacgatgttttcatctttaagaccgcctttttttaatatttgataggcatggcaaatatcggcttggtgcctataat |
11323390 |
T |
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| Q |
101 |
tctggtaaccattcgatcctgcaactagaaaggcccatttcttccctgttgtagactcaccttctgcaaaaacattatcagttacactcatccatattga |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11323389 |
tcacgtaaccattcgatcctgcaactagaaaggcccatttcttccctgttgtagactcaccttctgcaaaaacattatcagttacactcatccatattga |
11323290 |
T |
|
| Q |
201 |
agctatcaatgcaacccaatatttattcttgtgattcattt |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
11323289 |
agctatcaatgcaacccaatatttattcttgtgattcattt |
11323249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 29927180 - 29927034
Alignment:
| Q |
1 |
gcaatgtcatcgtacatgaaaacaacgatgttttcgtctttaagaccgccnnnnnnnaatatttgataggcatggcaaatatccgcttggtgcctataat |
100 |
Q |
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||||| ||||| ||||||||||||| |||||||| |||| |||||| || ||||| || |||||||| ||||||| | |||||||||||||| |
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| T |
29927180 |
gcaatatcatcatacatgaaaacaattatgttttcatcttgaagaccaccactttttaatatatggtaggcatgacaaatattagattggtgcctataat |
29927081 |
T |
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| Q |
101 |
tctggtaaccattcgatcctgcaactagaaaggcccatttcttccct |
147 |
Q |
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| T |
29927080 |
tggagtaaccttttgaaccagcaaccagtaaagcccattttttccct |
29927034 |
T |
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