View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8185_low_34 (Length: 240)

Name: NF8185_low_34
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8185_low_34
NF8185_low_34
[»] scaffold0006 (2 HSPs)
scaffold0006 (103-175)||(73712-73785)
scaffold0006 (185-229)||(73583-73627)
[»] chr7 (5 HSPs)
chr7 (24-75)||(12912111-12912162)
chr7 (25-75)||(12923881-12923931)
chr7 (127-187)||(42030502-42030563)
chr7 (113-146)||(20890291-20890324)
chr7 (113-146)||(24323312-24323345)
[»] chr8 (4 HSPs)
chr8 (113-174)||(40375147-40375209)
chr8 (185-229)||(40375021-40375064)
chr8 (113-146)||(4364897-4364930)
chr8 (113-142)||(38661000-38661029)
[»] chr6 (1 HSPs)
chr6 (113-145)||(19473570-19473602)


Alignment Details
Target: scaffold0006 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 73785 - 73712
Alignment:
Q  103 gtttaagaataaaaacaaataaaaatgaaattagttttttaatgctgtttggatttttcc-agttaacctcccc 175  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  73785 gtttaggaaaaaaaacaaataaaaatgaaaatagttttttaatgctgtttggatttttcctagtttacctcccc 73712  T

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Target: scaffold0006; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 73627 - 73583
Alignment:
Q  185 atgcttctcaaccttcttcctaactttctttctcctcctctctct 229  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  73627 atgcttctcaaccttcttcctcactttctttctcctcctctctct 73583  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 12912111 - 12912162
Alignment:
Q  24 aggttaagtttagtctgggaatggaattttctttcccaccatgggaaagggc 75  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12912111 aggttaagtttagcctgggaatggaattttctttcccaccatgggaaagggc 12912162  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 12923931 - 12923881
Alignment:
Q  25 ggttaagtttagtctgggaatggaattttctttcccaccatgggaaagggc 75  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12923931 ggttaagtttagcctgggaatggaattttctttcccaccatgggaaagggc 12923881  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 42030502 - 42030563
Alignment:
Q  127 atgaaattagttttttaatgctgtttggattttt-ccagttaacctcccccatttacgaatg 187  Q
    |||||||||||||||||||||| ||||||||||| | |||| | ||||||||||||| ||||    
T  42030502 atgaaattagttttttaatgctttttggatttttgctagtttatctcccccatttactaatg 42030563  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 20890291 - 20890324
Alignment:
Q  113 aaaaacaaataaaaatgaaattagttttttaatg 146  Q
    |||||||||||||||||||||| |||||||||||    
T  20890291 aaaaacaaataaaaatgaaattggttttttaatg 20890324  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 24323345 - 24323312
Alignment:
Q  113 aaaaacaaataaaaatgaaattagttttttaatg 146  Q
    |||||||||||||||||||||| |||||||||||    
T  24323345 aaaaacaaataaaaatgaaattggttttttaatg 24323312  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 40375209 - 40375147
Alignment:
Q  113 aaaaacaaataaaaatgaaattagttttttaatgctgtttggatttttcc-agttaacctccc 174  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||| |||| |||||||    
T  40375209 aaaaacaaataaaaatgaaaatagttttttattgctgtttggatttttcctagtttacctccc 40375147  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 40375064 - 40375021
Alignment:
Q  185 atgcttctcaaccttcttcctaactttctttctcctcctctctct 229  Q
    |||||||| |||||||||||| |||||||||||||||||||||||    
T  40375064 atgcttct-aaccttcttcctcactttctttctcctcctctctct 40375021  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 4364930 - 4364897
Alignment:
Q  113 aaaaacaaataaaaatgaaattagttttttaatg 146  Q
    |||||||||||||||||||||| |||||||||||    
T  4364930 aaaaacaaataaaaatgaaattggttttttaatg 4364897  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 142
Target Start/End: Complemental strand, 38661029 - 38661000
Alignment:
Q  113 aaaaacaaataaaaatgaaattagtttttt 142  Q
    ||||||||||||||||||||||||||||||    
T  38661029 aaaaacaaataaaaatgaaattagtttttt 38661000  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 19473602 - 19473570
Alignment:
Q  113 aaaaacaaataaaaatgaaattagttttttaat 145  Q
    ||||||||||||||||||||||| |||||||||    
T  19473602 aaaaacaaataaaaatgaaattaattttttaat 19473570  T

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