View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_low_4 (Length: 686)
Name: NF8185_low_4
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-120; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 13879070 - 13878786
Alignment:
| Q |
20 |
tattttgtttcgatccacctttcaaattttgttatattgattgaagcgtacacacataactgcttgatgcattaaatttagagctgttagaaaagatcat |
119 |
Q |
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| T |
13879070 |
tattttgttgcgatcgacctttcaaattttgttatattgattgaagcgtacacacataactgcttgctgcattaaatttagagctgttagaaaagatcat |
13878971 |
T |
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| Q |
120 |
tgaaaatcaagtgatattctgctgtggcaattggttttctctccatgtacgttcttttaattttcaggtgcatgctaaacaaatatatggtggcgacagg |
219 |
Q |
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| T |
13878970 |
tgaaaatcaagtgatattctgctgtggcaattggttttctctccatgtacgttcttt------------------taaaccaatatatggtggcgacagg |
13878889 |
T |
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| Q |
220 |
acatacaaagttttaattagcaccaaaggtaatagatagataacttttctttttattcatgagctgagggctgaggcttttaatgtgtgaatgaatcaga |
319 |
Q |
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| T |
13878888 |
acatacaaagttttaattagcaccaaaggtaatagatagataacttttcactttattcatgagctgagggctgaggcttttaatgtgtgaatgaatcaga |
13878789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 325 - 529
Target Start/End: Complemental strand, 13874629 - 13874427
Alignment:
| Q |
325 |
tatttttccttaccactacaagtgattaatggcctcattt-cgttgttaattgtgtttacaggaccaagtgatcactacacttgtgaagttcttagtaat |
423 |
Q |
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| T |
13874629 |
tatttgtccttacaacgtcaagtgatcaatggcctcattttcgttgttaattgtgtttatgggactaagtgatcgccacacttgtgaagttcttggtaat |
13874530 |
T |
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| Q |
424 |
tctcattcattctattg-ccataaattgcttgttagcttgtctaatcataacattgatagcatcgatcatttaacttttaactgttttacgggactatca |
522 |
Q |
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| T |
13874529 |
tctcattcattctattgcccataaatattttgctggcttgtcaaatcatagcattgataac----atcatttaattttcaatggttttacgggactatca |
13874434 |
T |
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| Q |
523 |
actgatc |
529 |
Q |
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| T |
13874433 |
agtgatc |
13874427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 613 - 668
Target Start/End: Complemental strand, 13878788 - 13878733
Alignment:
| Q |
613 |
gtacattcacaaatgggaccattgctggagggactgaagtttacaaataccaagaa |
668 |
Q |
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| T |
13878788 |
gtacattcacaaatgggaccattgctggagggactgaagtttacaaataccaagaa |
13878733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 13874799 - 13874737
Alignment:
| Q |
54 |
tattgattgaagcgtacacacataactgcttgatgcattaaatttagagctgttagaaaagat |
116 |
Q |
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| T |
13874799 |
tattgattgaagcgtacacacataattgcttgctgcattatacttagagctgttagaaaagat |
13874737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 557 - 668
Target Start/End: Complemental strand, 13884317 - 13884208
Alignment:
| Q |
557 |
tgctgaatttttgtttctttctcatggtttgggttggtgattctgcaacaccaggtgtacattcacaaatgggaccattgctggagggactgaagtttac |
656 |
Q |
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| T |
13884317 |
tgctgaatgcttctttctttatcatggtttaggttgatgattttgcaagatcaggt--acattcacaaatggggccattgctggaggcactgaagttagc |
13884220 |
T |
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| Q |
657 |
aaataccaagaa |
668 |
Q |
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| T |
13884219 |
agataccaagaa |
13884208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 668
Target Start/End: Complemental strand, 13882516 - 13882400
Alignment:
| Q |
550 |
aatgtattgctgaatttttgtttctttctcatggtttgggttggtgattctgcaacaccaggtgtacattcacaaatgggaccattgctggagggactga |
649 |
Q |
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| T |
13882516 |
aatgtactgctgaatgtttgtttctttatcatggtttagagtggtgattttgcaagaccag--ttacattcacgattggggccatcgctggaggcactga |
13882419 |
T |
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| Q |
650 |
agtttacaaataccaagaa |
668 |
Q |
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| T |
13882418 |
agtttgcagataccaagaa |
13882400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 338 - 431
Target Start/End: Complemental strand, 13884566 - 13884475
Alignment:
| Q |
338 |
cactacaagtgattaatggcctcatttcgttgttaattgtgtttacaggaccaagtgatcactacacttg-tgaagttcttagtaattctcattc |
431 |
Q |
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| T |
13884566 |
cactgcaagtaattaatggcttcatttccttgttaattgtgtttatggg---aagtgatcactacacttgttgaagttcttggtaattgtcattc |
13884475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 352 - 431
Target Start/End: Complemental strand, 13872260 - 13872183
Alignment:
| Q |
352 |
aatggcctcatttcgttgttaattgtgtttacaggaccaagtgatcactacacttg-tgaagttcttagtaattctcattc |
431 |
Q |
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| T |
13872260 |
aatggccccatttccttgttaattgtgtttatagg---aagtgatcactacacttgttgaagttcttggtaattgtcattc |
13872183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 431
Target Start/End: Original strand, 12957643 - 12957723
Alignment:
| Q |
349 |
attaatggcctcatttcgttgttaattgtgtttacaggaccaagtgatcactacac-ttgtgaagttcttagtaattctcattc |
431 |
Q |
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| T |
12957643 |
attaatggcctcatttccttgttaattgtgtttatggg---aagtgattactacactttttgaagttcttggtaattgtcattc |
12957723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 609
Target Start/End: Complemental strand, 13872045 - 13871985
Alignment:
| Q |
549 |
taatgtattgctgaatttttgtttctttctcatggtttgggttggtgattctgcaacacca |
609 |
Q |
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| T |
13872045 |
taatgtactgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagacca |
13871985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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