View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_low_5 (Length: 650)
Name: NF8185_low_5
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_low_5 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 343 - 650
Target Start/End: Complemental strand, 13879344 - 13879037
Alignment:
| Q |
343 |
ctcatctagatatgttttaggtttcacttaaaagagggagggatgaacagagaagtagttttttagttactattttaaatgatgaattagtttgcatgta |
442 |
Q |
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| T |
13879344 |
ctcatctagctatgttttaggtttcacttaaaagagggagggatgaacagagaagtagtattttagttactattttaaatgatgaattagtttgcatgta |
13879245 |
T |
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| Q |
443 |
tttgagatctaaaaagctatttagttagttaattagtgttctgttctgtttgtaccaatttctggatttgacattaattaccaattgctatcaatcaata |
542 |
Q |
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| T |
13879244 |
tttgagatctaaaaagctatttagttagttaattagtgttctgttctgtttgtaccaatttctggatttgacattaattaccaattgctatcaatcaata |
13879145 |
T |
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| Q |
543 |
ttataaatatatgattaacaatttcatttgctattataattatatagctagttgatgcaacttaatctgccttctattttgttgcgatccacctttcaaa |
642 |
Q |
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| T |
13879144 |
ttataaatatatgattaacaatttcatttgctattataattatatagctagttgatgcaacttaatctgccttctattttgttgcgatcgacctttcaaa |
13879045 |
T |
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| Q |
643 |
ttttgtta |
650 |
Q |
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| T |
13879044 |
ttttgtta |
13879037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 13879686 - 13879406
Alignment:
| Q |
1 |
acaacaacaacgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaa |
100 |
Q |
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| T |
13879686 |
acaacaacgatgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaa |
13879587 |
T |
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| Q |
101 |
ggaagagattgatgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaag |
200 |
Q |
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| T |
13879586 |
ggaagagattgatgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaag |
13879487 |
T |
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| Q |
201 |
cactgcgactttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
281 |
Q |
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| T |
13879486 |
cactgcgactttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
13879406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 13875461 - 13875189
Alignment:
| Q |
9 |
aacgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaaggaagaga |
108 |
Q |
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| T |
13875461 |
aacgatgactattatcttgttctctgtgattttgaggagaccgaggagtctttgatttttcggttgaatctggtcgccaacaacgtgaggaaggaagaga |
13875362 |
T |
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| Q |
109 |
ttgatgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaagcactgcga |
208 |
Q |
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| T |
13875361 |
ttgatgtctgtgttgatcacggtactctcaggattaaggatgctcttccaggtcgaaatcgattttcaggtacactcgacttgaaagggaagcatttcga |
13875262 |
T |
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| Q |
209 |
ctttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
281 |
Q |
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| T |
13875261 |
cgttgttaacactaaagccaaaatgatagagaacaatttccttgaaattgtggttcccaagctcaacaacaag |
13875189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 559
Target Start/End: Complemental strand, 13885034 - 13884996
Alignment:
| Q |
521 |
taccaattgctatcaatcaatattataaatatatgatta |
559 |
Q |
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| T |
13885034 |
taccaattggtatcaatcaatattataaatatatgatta |
13884996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 479
Target Start/End: Complemental strand, 13885159 - 13885075
Alignment:
| Q |
398 |
tagttttttagttactattttaaatgatgaattagtttgc---atgtatttgagatctaaaaagctatttagttagttaattagt |
479 |
Q |
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| T |
13885159 |
tagtattttagttgctattttaaatgcttaattagtatgatgaatgtattagagatctaaaaagggatttagttggttaattagt |
13885075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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