View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8185_low_6 (Length: 619)
Name: NF8185_low_6
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_low_6 |
 | |
|
| [»] scaffold0330 (1 HSPs) |
| | |
|
| [»] scaffold0240 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Complemental strand, 33414028 - 33413428
Alignment:
| Q |
1 |
atatattattcaataattttgaaacccaaattccccgattgttggataaagttaaatatttttgaagtataattcatattctaatgttagttagctgtgg |
100 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| | ||| |
|
|
| T |
33414028 |
atatcttattcaataattctgaaacccaaattccccggttgttggataaagttaaatattgttgaagtataattcatattctaat--tagttagttatgg |
33413931 |
T |
|
| Q |
101 |
ataaatccaactatatttgttggtta--------gttagtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctat |
192 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
33413930 |
ataaatccaactatgtttgttggttaattagttagttagtaactaactagttagtcagttagttagtggcttgtagtgcaagttattcaacttaacctat |
33413831 |
T |
|
| Q |
193 |
aagtacttagcttt-gtattcagttgatatagattgtatttgtatagcagacatctcatatctttcatattcaataatagaagagttttatcattccttt |
291 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33413830 |
aagtacttagcttttgtattcagttgatacagattgtat------agcacacatctcatatctctcatattcaataatagaagaattttatcattccttt |
33413737 |
T |
|
| Q |
292 |
gtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgtatgtgcatgttctatcaaatatatgtccttagggtggttg |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33413736 |
gtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctcaattatgtatgtgcatgttctatcaaatatatgtccttagggtggttg |
33413637 |
T |
|
| Q |
392 |
aaagccacttttgtgtttggtactcataggtggtggtcaagccttttaacttgcttggacatcggctaattgtttttgttttacagttagacattgtgta |
491 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33413636 |
aaagccacttttgtgtttagtactcataggtggtggtcgagtcttttaacttacttgaacatcggctaattgtttttgttttactgttagacattgtgta |
33413537 |
T |
|
| Q |
492 |
tctttagtggtctttttggcacgccttttaacttgcttggaaccatcattgatgaatacaaatgatgttgtcaagtttattttgaaaaatctcatattga |
591 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33413536 |
tctttagcggtctttttggcacgccttttaacttgcttggaaccatcattgatgaatacaaatgatgttgtcaagtttattttgaaaaatctcatattga |
33413437 |
T |
|
| Q |
592 |
gtttaatcg |
600 |
Q |
| |
|
||||||||| |
|
|
| T |
33413436 |
gtttaatcg |
33413428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 62 - 370
Target Start/End: Original strand, 28027943 - 28028227
Alignment:
| Q |
62 |
ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtgg |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
28027943 |
ttgaagtataattcatattctaatgttagttagttgtggataaatccaactatgcttgttggttagtt-------------------agtttgttagtgg |
28028023 |
T |
|
| Q |
162 |
cttgtagtgcaagttactcaacttagcctataagtacttagcttt-gtattcagttgatatagattgtatttgtatagcagacatctcatatctttcata |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
28028024 |
cttgtagtgcaagttactcaacttagcctataagtacttagcttttgtattcagttgatatagattgtat------agcacacatctcatatctctcata |
28028117 |
T |
|
| Q |
261 |
ttcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgtatgtgcatg |
360 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
28028118 |
ttcaataatagaagagttttatcattcttttgtagtttcctctttaagtgtgagtgtgtagagatcattctaatatttctctcaattatgtatgtgcatg |
28028217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 249 - 368
Target Start/End: Complemental strand, 13109186 - 13109068
Alignment:
| Q |
249 |
atatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatcattctattctttctctaaatt |
347 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||||||||| |||||||||| ||||| | ||||||||| ||| ||||||||||| |||||||| |||| |
|
|
| T |
13109186 |
atatctctcatattcaataata-aagagatttatcattcatttgtagttttctctctaaagtgtgagtatgt-gagatcattcttaactttctctcaatt |
13109089 |
T |
|
| Q |
348 |
atgtatgtgcatgttctatca |
368 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
13109088 |
ctatatgtgcatgttctatca |
13109068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 4659641 - 4659716
Alignment:
| Q |
146 |
gttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgatata |
222 |
Q |
| |
|
||||||| ||||||| | |||||||||||| |||| ||||||||||||| ||||| | |||||||||| | |||||| |
|
|
| T |
4659641 |
gttagttagttagtgacctgtagtgcaagtaactctacttagcctataaatactt-gttttgtattcaatagatata |
4659716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 5188291 - 5188366
Alignment:
| Q |
143 |
ttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttga |
218 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||||| ||||||||||||| || |||| |||||| ||| |||| |
|
|
| T |
5188291 |
ttagttagttagtttgtgacttgtagtgcaagttacaacacttagcctataaataattagttttgtaatcaattga |
5188366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 4040536 - 4040576
Alignment:
| Q |
392 |
aaagccacttttgtgtttggtactcataggtggtggtcaag |
432 |
Q |
| |
|
|||||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
4040536 |
aaagccacatttgtttttggtactgataggtggtggtcaag |
4040576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 367
Target Start/End: Complemental strand, 13107228 - 13107169
Alignment:
| Q |
307 |
agtgtgagtgtgtagagatcattctattctttctctaaattatgtatgtgcatgttctatc |
367 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||| ||| |||||||||||||| |||| |
|
|
| T |
13107228 |
agtgtgagtgtgt-gaaatcattctaatctttctctcgattctgtatgtgcatgttttatc |
13107169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 62 - 368
Target Start/End: Original strand, 43041180 - 43041481
Alignment:
| Q |
62 |
ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtgg |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43041180 |
ttgaagtataattcatattctaatgttagttagttatggatagatccaactatgcttgttggttagttagtaactaactagttagttagtttgttagtgg |
43041279 |
T |
|
| Q |
162 |
cttgtagtgcaagttactcaacttagcctataagtacttagc-tttgtattcagttgatatagattgtatttgtatagcagacatctcatatctttcata |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |
|
|
| T |
43041280 |
cttgtagtgcaagttactcaacttagcctataagtacttagcttttgtattcagttgatataga------ttgtatagcacacatctcatatctctcata |
43041373 |
T |
|
| Q |
261 |
ttcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgtatgtgcatg |
360 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
43041374 |
ttcaataatagaagagttttatcattcttttgtagtttcctctataagtgtgagtgtgtagagatcattctaatatttctctcaattatgtatgtgcatg |
43041473 |
T |
|
| Q |
361 |
ttctatca |
368 |
Q |
| |
|
|||||||| |
|
|
| T |
43041474 |
ttctatca |
43041481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 123 - 368
Target Start/End: Original strand, 43039349 - 43039589
Alignment:
| Q |
123 |
gttagttagtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagcttt-gtattcagttgatat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
43039349 |
gttagttagtaactaactagttagttagtttgttagtggcttgtattgcaagttactcaacttagcctataagtacttatcttttgtattcagttgatat |
43039448 |
T |
|
| Q |
222 |
agattgtatttgtatagcagacatctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtag |
321 |
Q |
| |
|
||||||||| |||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
43039449 |
agattgtat------agcacacatctcatatctctcatattcaatgatagaagagttttatcattcttttgtagtttcctctctaaatgtgagtgtgtag |
43039542 |
T |
|
| Q |
322 |
agatcattctattctttctctaaattatgtatgtgcatgttctatca |
368 |
Q |
| |
|
||||||||||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
43039543 |
agatcattctaatatttctctcaattatgtatgtgcatgttctatca |
43039589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 62 - 369
Target Start/End: Original strand, 14196671 - 14196979
Alignment:
| Q |
62 |
ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagtt--------agtaactaactagttagttagttt |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14196671 |
ttgaagtataattcatattctaatgttagttagtataggataaatccaactatgtttgttggttagttggttagtaagtaactaactagttagttagttt |
14196770 |
T |
|
| Q |
154 |
gttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgat-atagattgtatttgtatagcagacatctcatat |
252 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| ||||||||||| | ||||||||| || ||| | ||||||||| ||| ||||||||||| |
|
|
| T |
14196771 |
gttagaggcttgtagtgcaagttattcaacttatcctataagtacatg--tttgtattctgtagattacagattgtat------agctcacatctcatat |
14196862 |
T |
|
| Q |
253 |
ctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgta |
352 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
14196863 |
ctctcatattcaataatagaagagttttatcatttctttgtagtttcctctttaagtgtgagtgtgtagagatcattctaatttttctctcaattatgta |
14196962 |
T |
|
| Q |
353 |
tgtgcatgttctatcaa |
369 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
14196963 |
tgtgcatgttctatcaa |
14196979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 43039325 - 43039357
Alignment:
| Q |
62 |
ttgaagtataattcatattctaatgttagttag |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
43039325 |
ttgaagtataattcatattctaatgttagttag |
43039357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 30501619 - 30501577
Alignment:
| Q |
392 |
aaagccacttttgtgtttggtactcataggtggtggtcaagcc |
434 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
30501619 |
aaagccatgtttgtttttggtactcataggtggtggtcaagcc |
30501577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 7e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 62 - 368
Target Start/End: Complemental strand, 37747987 - 37747678
Alignment:
| Q |
62 |
ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagt--------aactaactagttagttagttt |
153 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | |||||||||||||||| ||| ||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
37747987 |
ttgaagtataattcatattctgatgttagttagtagaggataaatccaactatgtttattggttagttagttagtaagtaactaattagttggttagttt |
37747888 |
T |
|
| Q |
154 |
gttagtggcttgtagtgcaagttactcaacttagcctataagtacttagcttt-gtattcagttgatatagattgtatttgtatagcagacatctcatat |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
37747887 |
gttagtggcttgtagtgcaagttactcaacttagcctataaatacttggcttttgtattcagttgatatagattgtat------agcaaacatctcatac |
37747794 |
T |
|
| Q |
253 |
ctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgta |
352 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
37747793 |
ctctcatattcaataatagaagagttttatcattcctctgtagtttcctctctaagtgtgagtgtgtagagatcattctaatctttctctcgattatgta |
37747694 |
T |
|
| Q |
353 |
tgtgcatgttctatca |
368 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37747693 |
tgtgcatgttctatca |
37747678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 62 - 368
Target Start/End: Complemental strand, 37749543 - 37749243
Alignment:
| Q |
62 |
ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagtta--------gtaactaactagttagttagttt |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37749543 |
ttgaagtataattcatattctaatgttagttagtagaggataaatccaactatgtttgttggttagttagttagtaagtaactaactagttagttagttt |
37749444 |
T |
|
| Q |
154 |
gttagtggcttgtagtgcaagttactcaacttagcctataagtacttagc-tttgtattcagttgatatagattgtatttgtatagcagacatctcatat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
37749443 |
gttagtggcttgtagtgcaagttactcaacttagcctataagtacttaacttttgtattcagttgatataga------ttgtatagcacacatc------ |
37749356 |
T |
|
| Q |
253 |
ctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgta |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
37749355 |
---tcatattcaataatagaagagttttatcattcctttgtagttttctctctaagtgtgagtgtgtagagatcattctaatctttctctcaattatgta |
37749259 |
T |
|
| Q |
353 |
tgtgcatgttctatca |
368 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37749258 |
tgtgcatgttctatca |
37749243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 45809872 - 45809774
Alignment:
| Q |
96 |
tgtggataaatccaactatatttgttggttagtta----gtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcct |
190 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45809872 |
tgtggataaatccaactatgtttgttggttagttacttggtaactaactcgttagttagttagttagaggcttgtagtgcaagttactcaacttagcct |
45809774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 33829589 - 33829656
Alignment:
| Q |
131 |
gtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtac |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33829589 |
gtaactaactagttagttagtttgttagtagcttgtagtgcaagttactcaacttagcctataagtac |
33829656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 62 - 368
Target Start/End: Original strand, 38206827 - 38207133
Alignment:
| Q |
62 |
ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggtta----gttagtaactaactagttagttagtttgtta |
157 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38206827 |
ttgaagtataattaatattctaatgttagttagtagaggataaattcaactatgtttgttggttagttagttagtaactaactagttagttagtttgtta |
38206926 |
T |
|
| Q |
158 |
gtggcttgtagtgcaagttactcaacttagcct---ataagtacttagctttgtattcagttga-tatagattgtatttgtatagcagacatctcatatc |
253 |
Q |
| |
|
| ||||||||||||||||||||||||||||| | |||||||| | |||||||||||| || || ||| ||||||| || |||||| |||| |
|
|
| T |
38206927 |
gaggcttgtagtgcaagttactcaacttagcttataataagtac--atgtttgtattcagtagattacaga------ttgtataacacacatcttgtatc |
38207018 |
T |
|
| Q |
254 |
tttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgtat |
353 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |||||| ||||| | ||| | |||||||||||||||||| ||||||||| ||||||| || |
|
|
| T |
38207019 |
tctcatattcaataatagaagagttttatcattcctttatagttttctctctaaatgtaaatgtgtagagatcattctaatctttctcttaattatgcat |
38207118 |
T |
|
| Q |
354 |
gtgcatgttctatca |
368 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38207119 |
gtgcatgttctatca |
38207133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 141 - 368
Target Start/End: Original strand, 3585452 - 3585672
Alignment:
| Q |
141 |
agttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgat-atagattgtatttgtatagc |
239 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| | |||||||| ||| ||| | ||||||||| ||| |
|
|
| T |
3585452 |
agttagttagtttgttagaggcttgtagtgcaagttactcaacttagcctatacgtacatg--tttgtattaagtagattacagattgtat------agc |
3585543 |
T |
|
| Q |
240 |
agacatctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttc |
339 |
Q |
| |
|
| ||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
3585544 |
acacatctcatatctcttatattcaataacagaagagttttatcattcctttgtagtttcctctctaagtgtgagtgtgtagagatcattctaatctttc |
3585643 |
T |
|
| Q |
340 |
tctaaattatgtatgtgcatgttctatca |
368 |
Q |
| |
|
||| |||||||||| |||||||||||||| |
|
|
| T |
3585644 |
tctcaattatgtatatgcatgttctatca |
3585672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 929847 - 929951
Alignment:
| Q |
96 |
tgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataag |
195 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
929847 |
tgtggataaatccaattatgtttgttagttagttagtaactaactagttagttagtttgtttgtggcttgtagtgcaagaaactccacttagcctataag |
929946 |
T |
|
| Q |
196 |
tactt |
200 |
Q |
| |
|
||||| |
|
|
| T |
929947 |
tactt |
929951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 31477944 - 31478025
Alignment:
| Q |
62 |
ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagtaactaactagt |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
31477944 |
ttgaagtataattcatattctaatgttagttagttgtggataaatccaactatgtttgttggttagttagtaaccaactagt |
31478025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 7493580 - 7493674
Alignment:
| Q |
96 |
tgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcct |
190 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||| | | |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7493580 |
tgtggataaattcaactatgtttgttggttagttacttagtaactaactagttagttagttagaggcttgtagtgcaagttactcaacttagcct |
7493674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 3584475 - 3584545
Alignment:
| Q |
62 |
ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagt |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
3584475 |
ttgaagtataattcatattctaatgttagtttgtagaggataaattcaactatgtttgttggttagttagt |
3584545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 31478036 - 31478107
Alignment:
| Q |
260 |
attcaataatagaagagttttatcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatcattct |
331 |
Q |
| |
|
||||||||||| |||| |||||||||| ||| |||| ||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
31478036 |
attcaataata-aagacttttatcattattttatagtctcccctctaaagtgtgagtgtgtagagatcattct |
31478107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 401 - 449
Target Start/End: Original strand, 37139624 - 37139672
Alignment:
| Q |
401 |
tttgtgtttggtactcataggtggtggtcaagccttttaacttgcttgg |
449 |
Q |
| |
|
||||||||||| || || |||||||||||||||| ||||||||| |||| |
|
|
| T |
37139624 |
tttgtgtttggcacgcagaggtggtggtcaagccctttaacttgtttgg |
37139672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 596
Target Start/End: Complemental strand, 39649870 - 39649802
Alignment:
| Q |
528 |
ttggaaccatcattgatgaatacaaatgatgttgtcaagtttattttgaaaaatctcatattgagttta |
596 |
Q |
| |
|
|||||||||| || |||||||||||| | |||||||| |||||| ||||||| || | |||||||||| |
|
|
| T |
39649870 |
ttggaaccattatggatgaatacaaacggtgttgtcatgtttatcttgaaaactcgaacattgagttta |
39649802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 6e-48; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 391 - 512
Target Start/End: Complemental strand, 14528025 - 14527904
Alignment:
| Q |
391 |
gaaagccacttttgtgtttggtactcataggtggtggtcaagccttttaacttgcttggacatcggctaattgtttttgttttacagttagacattgtgt |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
14528025 |
gaaagccacttttgtgtttggtactcataggtggtggttgagccctttaacttgcttgggcatcgtctaattgttttcgttttacagttagacattgtgt |
14527926 |
T |
|
| Q |
491 |
atctttagtggtctttttggca |
512 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14527925 |
atctttagtggtctttttggca |
14527904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 391 - 512
Target Start/End: Complemental strand, 14532751 - 14532630
Alignment:
| Q |
391 |
gaaagccacttttgtgtttggtactcataggtggtggtcaagccttttaacttgcttggacatcggctaattgtttttgttttacagttagacattgtgt |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
14532751 |
gaaagccacttttgtgtttggtactcataggtggtggtcgagccctttaacttgcttgggcatcgtctaattgttttcgttttacagtttgacattgtgt |
14532652 |
T |
|
| Q |
491 |
atctttagtggtctttttggca |
512 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14532651 |
atctttagtggtctttttggca |
14532630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 31798781 - 31798913
Alignment:
| Q |
62 |
ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttag--------taactaactagttagttagttt |
153 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | ||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
31798781 |
ttgaagtataattcatattctaatattagtaat-tgtggataaattcaactatgtttgttggttagttagttatttagtaactaactagttagtttgttt |
31798879 |
T |
|
| Q |
154 |
gttagtggcttgtagtgcaagttactcaacttag |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
31798880 |
gttagtggcttgtagtgcaagttactcaatttag |
31798913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 331
Target Start/End: Original strand, 34391113 - 34391199
Alignment:
| Q |
246 |
ctcatatctttcatattcaataatagaagagtttt-atcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatcattct |
331 |
Q |
| |
|
||||||||| ||| ||||||||||| ||| ||||| |||||||||||||||||||||||| | ||||||||||||| | ||||||||| |
|
|
| T |
34391113 |
ctcatatctctcacattcaataata-aagtgtttttatcattcctttgtagtttcctctctaaagtgtgagtgtgtggcgatcattct |
34391199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 34486445 - 34486361
Alignment:
| Q |
246 |
ctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctc-tcatagtgtgagtgtgtagagatcattc |
330 |
Q |
| |
|
||||||||| ||| ||| ||||||| |||||||||||||||| |||||||||||||| | | | ||||||||||| |||||||||| |
|
|
| T |
34486445 |
ctcatatctctcacatttaataata-aagagttttatcattcttttgtagtttcctctttaaaatgtgagtgtgtggagatcattc |
34486361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 14528110 - 14528050
Alignment:
| Q |
1 |
atatattattcaataattttgaaacccaaattccccgattgttggataaagttaaatattt |
61 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
14528110 |
atatattattcaataattcagcaacccccattccccggttgttggataacgttaaatattt |
14528050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 62 - 325
Target Start/End: Original strand, 53611218 - 53611450
Alignment:
| Q |
62 |
ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtgg |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
53611218 |
ttgaagtataattcatattctaatgttagttagttgtggataaatccaactatgtttgttggt---------------tagttagttagttggttagtga |
53611302 |
T |
|
| Q |
162 |
cttgtagtgcaagttactcaacttagcctataagtacttag-ctttgtattcagttgatatagattgtatttgtatagcagacatctcatatctttcata |
260 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| ||||||||| ||||| ||||||| || ||| || | ||||||||| ||| | |
|
|
| T |
53611303 |
cttgtagtgcaagtaactccacttagcctatgagtacttagtttttgtgttcagtt-------------ctttaatatcaca---ctcatatctctcaaa |
53611386 |
T |
|
| Q |
261 |
ttcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagat |
325 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
53611387 |
ttcaataata-aagagttttatcattcctttgtagtttcctctctaaatgtgagtgtgtagagat |
53611450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 29298626 - 29298553
Alignment:
| Q |
148 |
tagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgatata |
222 |
Q |
| |
|
||||| ||||| ||| ||||| |||||| |||||||||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
29298626 |
tagttagttagcggcatgtagagcaagtaactcaacttagcctataagtactt-gttttgtattcaattgatata |
29298553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 4810081 - 4809991
Alignment:
| Q |
127 |
gttagtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgat |
219 |
Q |
| |
|
||||||||||||||| |||||||||| || | || ||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4810081 |
gttagtaactaactacttagttagttggtcaatgacttgttgtgcaagtaactttacttagcctataagtactt--gtttgtattcagttgat |
4809991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 509
Target Start/End: Complemental strand, 50358844 - 50358728
Alignment:
| Q |
395 |
gccacttttgtgtttggtactcataggtggtggtcaagccttttaacttgcttggacatcggctaattgt-ttttgtttt-acagttagacattgtgtat |
492 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| || | ||| |||| ||||||| |||||||||| ||||||||| |||| | |||||||||||| |
|
|
| T |
50358844 |
gccacatttgtgtttggcactcataggtggtggtcgagtccttttacttatctggacattggctaattgttttttgttttgacagattgacattgtgtat |
50358745 |
T |
|
| Q |
493 |
ctttagtggtctttttg |
509 |
Q |
| |
|
|||| || |||| |||| |
|
|
| T |
50358744 |
cttttgtagtctctttg |
50358728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 262 - 331
Target Start/End: Complemental strand, 496648 - 496582
Alignment:
| Q |
262 |
tcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattct |
331 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
496648 |
tcaataata-aagagttttatttttcctttgtagtttcttctac--gtgtgagtgtgtagagatcattct |
496582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 54017245 - 54017291
Alignment:
| Q |
322 |
agatcattctattctttctctaaattatgtatgtgcatgttctatca |
368 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
54017245 |
agatcattctaatctttctctcaattttgtatgtgcgtgttctatca |
54017291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 496797 - 496765
Alignment:
| Q |
62 |
ttgaagtataattcatattctaatgttagttag |
94 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
496797 |
ttgaagtattattcatattctaatgttagttag |
496765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 17130 - 17063
Alignment:
| Q |
260 |
attcaataatagaagagttttatcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatca |
327 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||| ||||||| |
|
|
| T |
17130 |
attcaataata-aagagttttatcattcctttgtagtttcctctctaaagtgtgtgtgtgtggagatca |
17063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0240 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0240
Description:
Target: scaffold0240; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 1148 - 1081
Alignment:
| Q |
260 |
attcaataatagaagagttttatcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatca |
327 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||| ||||||| |
|
|
| T |
1148 |
attcaataata-aagagttttatcattcctttgtagtttcctctctaaagtgtgtgtgtgtggagatca |
1081 |
T |
|
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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 6600782 - 6600746
Alignment:
| Q |
96 |
tgtggataaatccaactatatttgttggttagttagt |
132 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6600782 |
tgtggataaatccaactatgtttgttggttagttagt |
6600746 |
T |
|
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