View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8185_low_7 (Length: 569)

Name: NF8185_low_7
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8185_low_7
NF8185_low_7
[»] chr4 (16 HSPs)
chr4 (342-548)||(17732772-17732979)
chr4 (261-547)||(40289031-40289314)
chr4 (342-515)||(31734527-31734697)
chr4 (263-547)||(45612316-45612597)
chr4 (377-531)||(44507704-44507857)
chr4 (366-550)||(2641134-2641321)
chr4 (357-438)||(3419960-3420041)
chr4 (450-547)||(54305656-54305752)
chr4 (111-241)||(658195-658320)
chr4 (461-547)||(55680737-55680822)
chr4 (112-201)||(55681028-55681112)
chr4 (361-441)||(658455-658536)
chr4 (412-465)||(24600931-24600984)
chr4 (412-465)||(24614618-24614671)
chr4 (486-550)||(35530060-35530122)
chr4 (116-193)||(45612167-45612244)
[»] chr6 (19 HSPs)
chr6 (357-547)||(12843903-12844092)
chr6 (359-550)||(19542134-19542325)
chr6 (268-547)||(17540017-17540295)
chr6 (357-547)||(14494412-14494601)
chr6 (357-550)||(1255634-1255827)
chr6 (342-460)||(57082-57201)
chr6 (446-547)||(34708928-34709028)
chr6 (417-556)||(19294376-19294512)
chr6 (399-551)||(33234871-33235017)
chr6 (380-550)||(2602087-2602255)
chr6 (458-547)||(34011225-34011313)
chr6 (458-547)||(34013537-34013625)
chr6 (357-434)||(34709064-34709141)
chr6 (261-326)||(19294549-19294614)
chr6 (112-181)||(34010938-34011007)
chr6 (261-326)||(14494316-14494381)
chr6 (380-425)||(17261715-17261760)
chr6 (499-547)||(57008-57056)
chr6 (113-201)||(34013828-34013911)
[»] chr7 (22 HSPs)
chr7 (342-550)||(37338721-37338928)
chr7 (378-550)||(27616322-27616494)
chr7 (357-547)||(46532854-46533043)
chr7 (417-517)||(22290892-22290991)
chr7 (420-543)||(45215999-45216121)
chr7 (392-548)||(11809286-11809440)
chr7 (380-548)||(11820525-11820691)
chr7 (359-530)||(32716489-32716658)
chr7 (405-478)||(44572487-44572560)
chr7 (375-517)||(6439769-6439914)
chr7 (399-550)||(27993899-27994052)
chr7 (459-548)||(11816926-11817013)
chr7 (448-548)||(11810979-11811077)
chr7 (486-547)||(11812611-11812670)
chr7 (111-180)||(22291172-22291241)
chr7 (449-550)||(44182664-44182764)
chr7 (253-404)||(10678435-10678584)
chr7 (399-474)||(11814414-11814489)
chr7 (114-241)||(46014521-46014643)
chr7 (380-542)||(48598314-48598474)
chr7 (109-154)||(10678674-10678719)
chr7 (261-326)||(45215898-45215963)
[»] chr2 (18 HSPs)
chr2 (357-547)||(26576061-26576250)
chr2 (357-547)||(34409554-34409743)
chr2 (363-543)||(44649945-44650126)
chr2 (399-547)||(9929631-9929778)
chr2 (357-547)||(27004035-27004227)
chr2 (431-547)||(32200870-32200985)
chr2 (357-550)||(4748053-4748245)
chr2 (357-548)||(17651258-17651447)
chr2 (412-531)||(13037324-13037442)
chr2 (357-438)||(15990041-15990123)
chr2 (260-414)||(13039011-13039165)
chr2 (460-550)||(16661253-16661342)
chr2 (261-326)||(34409459-34409524)
chr2 (111-180)||(41849351-41849420)
chr2 (258-316)||(41849228-41849286)
chr2 (261-321)||(17651476-17651536)
chr2 (109-161)||(32200608-32200660)
chr2 (498-550)||(41849016-41849068)
[»] chr5 (4 HSPs)
chr5 (359-550)||(32676610-32676799)
chr5 (261-479)||(40837970-40838186)
chr5 (384-547)||(38989252-38989412)
chr5 (463-550)||(40837803-40837889)
[»] chr1 (13 HSPs)
chr1 (357-550)||(9148972-9149163)
chr1 (344-550)||(48632542-48632748)
chr1 (357-547)||(32740850-32741036)
chr1 (261-550)||(23431864-23432155)
chr1 (379-550)||(3954947-3955117)
chr1 (380-550)||(3387652-3387821)
chr1 (416-547)||(18476506-18476637)
chr1 (364-475)||(126323-126435)
chr1 (357-550)||(7021541-7021737)
chr1 (399-550)||(50127176-50127325)
chr1 (467-550)||(125174-125256)
chr1 (380-550)||(16426429-16426598)
chr1 (267-421)||(18488333-18488488)
[»] chr3 (19 HSPs)
chr3 (343-550)||(11410680-11410887)
chr3 (357-531)||(43921916-43922089)
chr3 (369-550)||(21408844-21409025)
chr3 (357-550)||(27063737-27063930)
chr3 (357-542)||(10516138-10516323)
chr3 (269-486)||(26565359-26565577)
chr3 (357-542)||(10657411-10657595)
chr3 (358-473)||(17715817-17715934)
chr3 (358-473)||(19017046-19017163)
chr3 (342-468)||(14218476-14218604)
chr3 (381-474)||(29697023-29697116)
chr3 (443-504)||(2227280-2227340)
chr3 (417-502)||(49860462-49860546)
chr3 (111-241)||(43921666-43921791)
chr3 (342-416)||(49861099-49861174)
chr3 (111-160)||(25092126-25092175)
chr3 (446-495)||(27109376-27109424)
chr3 (446-495)||(27109774-27109822)
chr3 (181-241)||(10515952-10516012)
[»] chr8 (22 HSPs)
chr8 (357-547)||(28421041-28421230)
chr8 (357-547)||(15131941-15132129)
chr8 (368-545)||(44502293-44502469)
chr8 (352-550)||(1226053-1226250)
chr8 (424-550)||(15850496-15850621)
chr8 (381-550)||(18393548-18393716)
chr8 (430-545)||(37855162-37855276)
chr8 (384-550)||(27401820-27401985)
chr8 (358-546)||(18603044-18603218)
chr8 (414-523)||(2889764-2889872)
chr8 (414-523)||(3145263-3145371)
chr8 (380-465)||(13097519-13097604)
chr8 (261-323)||(15131843-15131905)
chr8 (414-530)||(3159848-3159963)
chr8 (110-177)||(18602813-18602880)
chr8 (382-461)||(31772527-31772606)
chr8 (414-538)||(2796200-2796326)
chr8 (108-161)||(15131731-15131784)
chr8 (446-530)||(2875441-2875524)
chr8 (498-550)||(13097441-13097493)
chr8 (498-550)||(28867285-28867337)
chr8 (498-550)||(28869848-28869900)
[»] scaffold0325 (1 HSPs)
scaffold0325 (375-550)||(12875-13050)
[»] scaffold0019 (1 HSPs)
scaffold0019 (344-502)||(70030-70190)
[»] scaffold0012 (1 HSPs)
scaffold0012 (380-550)||(209188-209355)
[»] scaffold1723 (1 HSPs)
scaffold1723 (380-550)||(334-501)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 342 - 548
Target Start/End: Complemental strand, 17732979 - 17732772
Alignment:
Q  342 gcttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattagg-ggttatagacattaaagttgattataacatttttagctt 440  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||||||| ||| ||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  17732979 gcttccacatatcgtagatacaagagttacatgtgttttgagaaatgttgattaattaggaggtaatagacattacagttgattataacatttttagctt 17732880  T
Q  441 tcttgatagtagatgaataaat-aaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgta 539  Q
    | |||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||| ||||||||||||||||| || ||||| |||||||||||| ||    
T  17732879 ttttgatagtagatgaataaataaaaggtcaaatactacgatatc-ttgctttagaactttttctaatgaaataacttgctcaagttagatgcttatata 17732781  T
Q  540 tgtattttg 548  Q
    |||||||||    
T  17732780 tgtattttg 17732772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 261 - 547
Target Start/End: Original strand, 40289031 - 40289314
Alignment:
Q  261 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacatatcgcagat 360  Q
    ||||||||||||||||||| |||||||| ||||| ||| |||||| ||| ||||||||||||||||        || ||| ||||| ||| | |  ||||    
T  40289031 ggtgtccgacacctatataacactcatacgagtcatgtcggacaactcaaacaaatatctaaaacatttttt--ctctcttgcttccacacaccatagat 40289128  T
Q  361 acaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataa 460  Q
    |||||| |||||| ||| |||||||||||  |||||||||||||| ||||||||| | |||||||    |||||||| ||| ||||||||||||||||||    
T  40289129 acaagatttacatatgttttgagaaatgttaatcaattaggggttgtagacattacaattgattaagttatttttagtttttttgatagtagatgaataa 40289228  T
Q  461 ataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||   ||| ||| ||| |||| ||||||||||    
T  40289229 ataaaggtcaaatactatgatatc-ttgttgtagaactttttctaatgaaataaattgtccaagttaaatgtttatatatgtatttt 40289314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 342 - 515
Target Start/End: Complemental strand, 31734697 - 31734527
Alignment:
Q  342 gcttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagcttt 441  Q
    ||||| ||||| || ||||||||||||||||| ||| ||||||||||| |||||  | ||||| |||||||||| ||||||||||||||||||||||| |    
T  31734697 gcttccacataccgtagatacaagagttacatatgttttgagaaatgttgatcacat-ggggtaatagacattatagttgattataacatttttagctct 31734599  T
Q  442 cttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaa 515  Q
     |||||||||||||||||||||||||  |||||||| |||||| ||||||||||| ||||||||||||||||||    
T  31734598 tttgatagtagatgaataaataaagg-aaaatactacgatatc-ttgttttagaactttttctaatgaaataaa 31734527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 263 - 547
Target Start/End: Original strand, 45612316 - 45612597
Alignment:
Q  263 tgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctc--gcttctacatatcgcagat 360  Q
    |||||||||||| |||| |||||||| ||||| ||| |||||| ||| ||||||||||||||||         | ||||  |||||  || | |  ||||    
T  45612316 tgtccgacacctgtataacactcatacgagtcgtgtcggacaactcaaacaaatatctaaaacaatttttttttctctcttgcttccgcacaccatagat 45612415  T
Q  361 acaagagttacatgtgtgtt-gagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaata 459  Q
    ||||||||||||| ||| || ||||||||| ||| ||| |||| |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||    
T  45612416 acaagagttacatatgtttttgagaaatgttgattaataagggtttatagacattatagttgattatatcatttttagcttttttgatagtagatgaata 45612515  T
Q  460 aataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    |||||||||||||||     ||||| ||||| |||||  ||||||||||| ||||||| ||||| || |||| |||| ||||||||||    
T  45612516 aataaaggtcaaata-----atatc-ttgttgtagaacattttctaatgacataaattgctcaagttggatgtttatatatgtatttt 45612597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 377 - 531
Target Start/End: Complemental strand, 44507857 - 44507704
Alignment:
Q  377 tgttgagaaatgt-agatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatac 475  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||  |||| |||||||||| |||| || |||| ||||| |||||||||||||||||      
T  44507857 tgttgagaaatgttagatcaatgagggattatagacattaaagtcaattacaacatttttatctttttttatagaagatggataaataaaggtcaaatgt 44507758  T
Q  476 tatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatg 531  Q
     || |||| |||||||||| ||||||| |||||||||||||||||||| |||||||    
T  44507757 catcatat-tttgttttag-aatttttttaatgaaataaatttctcaaattagatg 44507704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 366 - 550
Target Start/End: Complemental strand, 2641321 - 2641134
Alignment:
Q  366 agttacatgtgtgttgagaaatgtagatcaattaggg-gttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataa 464  Q
    |||| ||| ||||||||||||||| ||||||| | || |||||||| |||||||||||||| ||  |||||  |||| || ||||||||| |||||||||    
T  2641321 agtttcatatgtgttgagaaatgttgatcaatcatggagttatagaaattaaagttgattacaatgtttttgactttttttatagtagataaataaataa 2641222  T
Q  465 aggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgctta---tgtatgtattttgat 550  Q
    ||||||||||| ||  ||| |||||||||||| |||||  |||||||||| || ||||| ||| || ||||   |||||||||||||||    
T  2641221 aggtcaaataccatagtat-tttgttttagaacttttttcaatgaaataagttgctcaaattaaattcttattgtgtatgtattttgat 2641134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 357 - 438
Target Start/End: Complemental strand, 3420041 - 3419960
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagc 438  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||| |||||||||||  |||||||||    
T  3420041 agatacaagagttacatatgttttgagaaatgttgatcaattaggggttatagatattatagttgattatataatttttagc 3419960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 54305752 - 54305656
Alignment:
Q  450 tagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||| |||||||||| ||||||||| ||||| ||| ||| || | ||||||||||    
T  54305752 tagatgaataaataaaggtcaaatactatgatatc-ttgtcgtagaactttttctaattaaataaattgctcaagttaaatgtttgtatatgtatttt 54305656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 658195 - 658320
Alignment:
Q  111 ctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactccactcctatgacacttgtacgatagttgtag 210  Q
    |||||||||||| |||||||||| || |  |||||||||||||| |||||| || |||||| ||     |||| ||||||||||||||||| |  ||| |    
T  658195 ctatgaagcacggacacctataggaccaagcgtgtcgcagtgtccgacacgtgtcggtgtccga-----cacttctatgacacttgtacgacacgtgtcg 658289  T
Q  211 gacaactaagaccagtgtcatagataaaatt 241  Q
    || ||| |||||||||||| || ||||||||    
T  658290 gataaccaagaccagtgtcctaaataaaatt 658320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 547
Target Start/End: Complemental strand, 55680822 - 55680737
Alignment:
Q  461 ataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    ||||| |||||||||||||||||| ||||| ||||| ||||||| |||| | ||||| ||| | ||||||| |||| ||||||||||    
T  55680822 ataaatgtcaaatactatgatatc-ttgttgtagaactttttctgatgacagaaattgctcgagttagatgtttatatatgtatttt 55680737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 55681112 - 55681028
Alignment:
Q  112 tatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactccactcctatgacacttgtacga 201  Q
    ||||||||||| ||||||  || ||||| |||||||| ||||| ||||||||| |||||| ||     ||||||||||||||||||||||    
T  55681112 tatgaagcacggacacctcgaggactaggcgtgtcgcggtgtccgacacgcgtcggtgtccga-----cactcctatgacacttgtacga 55681028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 441
Target Start/End: Original strand, 658455 - 658536
Alignment:
Q  361 acaagagttacatgtgtgttgagaaatgtagatcaatt-aggggttatagacattaaagttgattataacatttttagcttt 441  Q
    ||||||||||||| |||| ||| |||||| || ||||| | || ||||||| ||| |||||||||| |||||||||| ||||    
T  658455 acaagagttacatatgtgctgaaaaatgttgaacaattaaaggtttatagaaatttaagttgattacaacatttttaacttt 658536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 465
Target Start/End: Complemental strand, 24600984 - 24600931
Alignment:
Q  412 attaaagttgattataacatttttagctttcttgatagtagatgaataaataaa 465  Q
    |||||| || |||| |||||||||| |||| ||||||||||||| |||||||||    
T  24600984 attaaatttaattacaacatttttaacttttttgatagtagatggataaataaa 24600931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 465
Target Start/End: Complemental strand, 24614671 - 24614618
Alignment:
Q  412 attaaagttgattataacatttttagctttcttgatagtagatgaataaataaa 465  Q
    |||||| ||||||| || ||||||| |||| ||||||||||||| |||||||||    
T  24614671 attaaatttgattacaatatttttaacttttttgatagtagatggataaataaa 24614618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 550
Target Start/End: Complemental strand, 35530122 - 35530060
Alignment:
Q  486 ttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    ||||||||||||||||  ||| |||||||||| ||||| ||||||||  |||||| |||||||||    
T  35530122 ttgttttagaaatttt--taaagaaataaattgctcaatttagatgcacatgtatatattttgat 35530060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 45612167 - 45612244
Alignment:
Q  116 aagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactccactcctatgacac 193  Q
    ||||||| || ||| ||||||||| |||||||| ||| |  ||| |||| |||||| |||||| ||||||||||||||    
T  45612167 aagcacggacgcctctagtactaggcgtgtcgcggtgcccaacatgcgtcggtgtccgacactacactcctatgacac 45612244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 357 - 547
Target Start/End: Complemental strand, 12844092 - 12843903
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 456  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  12844092 agatacaagagttacatatgttttgagaaatgttgatcaattaggggttatacacattatagttgattatatcatttttagcttttttgatagtagatga 12843993  T
Q  457 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    |||||||||||||||||||||||||||| || || ||||| || ||||||||||||| ||| ||||| ||||||| |||| ||||||||||    
T  12843992 ataaataaaggtcaaatactatgatatc-ttattgtagaacttgttctaatgaaatatattgctcaagttagatgtttatatatgtatttt 12843903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 359 - 550
Target Start/End: Complemental strand, 19542325 - 19542134
Alignment:
Q  359 atacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaat 458  Q
    ||||||||||||||| ||| ||||||||| | || |||||| |||||| ||| ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  19542325 atacaagagttacatttgttttgagaaatattgaacaattaagggttagagatattaaagttgattataacaattttagcattcttgatagtagatgaat 19542226  T
Q  459 aaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatg-cttatgtatgtattttgat 550  Q
    ||||||||| ||||||||| ||||| |||||||||||| |||||| |||||||| ||||| |||| ||||||| |||||||||||||||||||    
T  19542225 aaataaaggacaaatactaagatat-tttgttttagaattttttccaatgaaatcaatttttcaagttagatgccttatgtatgtattttgat 19542134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 268 - 547
Target Start/End: Complemental strand, 17540295 - 17540017
Alignment:
Q  268 gacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacatatcgcagatacaagag 367  Q
    |||||||||||| |||||||||||  | ||| |||||| ||||||||||||||||||||        || ||| |||||  || | |  |||||||||||    
T  17540295 gacacctatataacactcatatgaaccgtgtcggacaactcagacaaatatctaaaacaatttttttctctcttgcttccgcacaccatagatacaagag 17540196  T
Q  368 ttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaagg 467  Q
    |||||| ||| ||||||||||| |||||||||||||||||| |  ||| ||||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  17540195 ttacatatgttttgagaaatgttgatcaattaggggttataaaagttatagttgattatatcatttttagcttttttgatagtagataaataaataaagg 17540096  T
Q  468 tcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    ||||||||||||||||| || ||  |||| |||||||||||  ||||||| | ||| ||||||| |||| ||||||||||    
T  17540095 tcaaatactatgatatc-ttattgcagaactttttctaatgtcataaattgcccaagttagatgtttatatatgtatttt 17540017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 357 - 547
Target Start/End: Original strand, 14494412 - 14494601
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 456  Q
    |||||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||| |||| |||||| |||| ||    
T  14494412 agatacaagaattacatatgttttgagaaatgttgatcaattaggggttatagacatcatagttgattatatcatttttaacttttttgataatagacga 14494511  T
Q  457 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| || ||  |||||| |||| ||||||||||    
T  14494512 ataaataaaggtcaaatactatgatat-tttgttgtagaactttttctaatgaaataaattgctaaagatagatgtttatatatgtatttt 14494601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 357 - 550
Target Start/End: Original strand, 1255634 - 1255827
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattagggg-ttatagacattaaagttgattataacatttttagctttcttgatagtagatg 455  Q
    ||||||||||| |||||  || ||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| ||||     
T  1255634 agatacaagagctacataggttttgaggaatgttgatcaattagggggttatagacattacagttgattataacatttttagcttttttgatagcagata 1255733  T
Q  456 aataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
     ||||||||| ||||||||||| |||||| ||||||||||| |||||||||| |||||| || ||||| ||| |||||||| |||||||||||||    
T  1255734 cataaataaatgtcaaatactacgatatc-ttgttttagaactttttctaataaaataacttgctcaagttaaatgcttatatatgtattttgat 1255827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 342 - 460
Target Start/End: Complemental strand, 57201 - 57082
Alignment:
Q  342 gcttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattag-gggttatagacattaaagttgattataacatttttagctt 440  Q
    ||||| ||||| || ||||||||||||||||| ||| | ||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| |||    
T  57201 gcttccacataccgtagatacaagagttacatatgtttggagaaatgttgatcaactagagggttatagacattaaagttgattataacatttttacctt 57102  T
Q  441 tcttgatagtagatgaataa 460  Q
    | ||||||||||||||||||    
T  57101 ttttgatagtagatgaataa 57082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 446 - 547
Target Start/End: Complemental strand, 34709028 - 34708928
Alignment:
Q  446 atagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatt 545  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  |||| |||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  34709028 atagtagatgaataaataaaggtcaaatactatgatatc-ttgttggagaactttttctaatgaaataaatttctcaagttagatgtttatatatgtatt 34708930  T
Q  546 tt 547  Q
    ||    
T  34708929 tt 34708928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 417 - 556
Target Start/End: Complemental strand, 19294512 - 19294376
Alignment:
Q  417 agttgattataacattttt-agctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaa 515  Q
    ||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| |||||   ||| ||||||||||||||||||    
T  19294512 agttgattatatcattttttagcttttttcatagtagatgaataaataaaggtcaaatactatgatatc-ttgtt---gaactttttctaatgaaataaa 19294417  T
Q  516 tttctcaacttagatgcttatgtatgtattttgatgtccat 556  Q
    || || || ||||||| |||| |||||||||| || |||||    
T  19294416 ttgcttaagttagatgtttatatatgtattttaatttccat 19294376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 399 - 551
Target Start/End: Original strand, 33234871 - 33235017
Alignment:
Q  399 aggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaat 498  Q
    ||||||||||||||||||||||||||| |||||||| |  ||| | ||||||||||| |||||| |||||||||||||||  |||| ||||| || |||     
T  33234871 aggggttatagacattaaagttgattacaacattttgaaattt-tcgatagtagatggataaat-aaggtcaaatactattgtatc-ttgttata-aaac 33234966  T
Q  499 ttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgatg 551  Q
    |||| |||||||||||||| ||||| ||||||||  |||||||||||||||||    
T  33234967 ttttttaatgaaataaattgctcaagttagatgc--atgtatgtattttgatg 33235017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 380 - 550
Target Start/End: Complemental strand, 2602255 - 2602087
Alignment:
Q  380 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatg 479  Q
    |||||||||| |||||| ||||| ||||| |||||||||||||||| ||||  ||||  ||| | ||||||| ||| |||||||||||  |||||||||     
T  2602255 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggtaaatactatt 2602156  T
Q  480 atatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
     |||| ||||| || |  ||||||||||||| |||  | || || |||||||| ||||| |||||||||||    
T  2602155 gtatc-ttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgat 2602087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 547
Target Start/End: Original strand, 34011225 - 34011313
Alignment:
Q  458 taaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    |||||||| |||||||||||||||||| ||||| ||||| ||||| | |||| ||||||| ||| | ||||||| |||| ||||||||||    
T  34011225 taaataaatgtcaaatactatgatatc-ttgttgtagaactttttatgatgacataaattgctcgagttagatgtttatatatgtatttt 34011313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 547
Target Start/End: Complemental strand, 34013625 - 34013537
Alignment:
Q  458 taaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    |||||||| |||||||||||||||||| ||||| ||||| ||||| | |||| ||||||| ||| | ||||||| |||| ||||||||||    
T  34013625 taaataaatgtcaaatactatgatatc-ttgttgtagaactttttatgatgacataaattgctcgagttagatgtttatatatgtatttt 34013537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 434
Target Start/End: Complemental strand, 34709141 - 34709064
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttt 434  Q
    ||||| |||||||| || | | |||| |||||| |||||||||||||||||| |||||| ||||||||||| ||||||    
T  34709141 agatataagagttatatatattttgaaaaatgttgatcaattaggggttatatacattatagttgattatatcatttt 34709064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 19294614 - 19294549
Alignment:
Q  261 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaaca 326  Q
    |||||||||||||| |||| |||||||| ||| | ||| |||||| ||| ||||||||||||||||    
T  19294614 ggtgtccgacacctgtataacactcatacgagccgtgtcggacaagtcacacaaatatctaaaaca 19294549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 34010938 - 34011007
Alignment:
Q  112 tatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactcca 181  Q
    ||||||||||| ||||||  || ||||| |||||||| ||||| ||||||||| |||||| |||||||||    
T  34010938 tatgaagcacggacacctcaaggactaggcgtgtcgcggtgtccgacacgcgtcggtgtccgacactcca 34011007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 14494316 - 14494381
Alignment:
Q  261 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaaca 326  Q
    ||||||||||||||||||| |||| ||| ||| | ||| |||||| ||| |||||||||| |||||    
T  14494316 ggtgtccgacacctatataacactaatacgagccgtgtcggacaactcacacaaatatcttaaaca 14494381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 425
Target Start/End: Complemental strand, 17261760 - 17261715
Alignment:
Q  380 tgagaaatgtagatcaattaggggttatagacattaaagttgatta 425  Q
    |||||||||| ||||||| |||||||||  ||||||||||||||||    
T  17261760 tgagaaatgttgatcaatgaggggttatgtacattaaagttgatta 17261715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 547
Target Start/End: Complemental strand, 57056 - 57008
Alignment:
Q  499 ttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    |||||||||||||||| || ||||| ||||||||||||| || ||||||    
T  57056 ttttctaatgaaataagttgctcaagttagatgcttatgaatatatttt 57008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 34013911 - 34013828
Alignment:
Q  113 atgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactccactcctatgacacttgtacga 201  Q
    |||||||||| ||||||  || ||||| |||||||| ||||| |||| |||| |||||| |||||||||     |||||||||||||||    
T  34013911 atgaagcacggacacctcaaggactaggcgtgtcgcggtgtccgacaagcgtcggtgtccgacactcca-----atgacacttgtacga 34013828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 342 - 550
Target Start/End: Original strand, 37338721 - 37338928
Alignment:
Q  342 gcttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagcttt 441  Q
    ||||| ||||| || ||||||||||||||||| ||  ||||||||||| |||||||||||| || || |||||||||||||| |||||||||||| ||||    
T  37338721 gcttccacataccgtagatacaagagttacatatgctttgagaaatgttgatcaattagggattttaaacattaaagttgataataacatttttaacttt 37338820  T
Q  442 cttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatg 541  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||| | ||  |||||||||||||||| || ||||| |||||||||||| ||||    
T  37338821 tttgatagtagatgaataaataaaggtcaaatactatgatatc-ttgtttgataacattttctaatgaaataatttgctcaagttagatgcttatatatg 37338919  T
Q  542 tattttgat 550  Q
    |||||||||    
T  37338920 tattttgat 37338928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 378 - 550
Target Start/End: Complemental strand, 27616494 - 27616322
Alignment:
Q  378 gttgagaaatgtagatcaattagggg-ttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatact 476  Q
    |||||||||||  | ||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||| ||||||||||    
T  27616494 gttgagaaatgatggtcaattagggggttatagacattaaagttgattataacatttttagcttttctgatagtagatgtataaataaaagtcaaatact 27616395  T
Q  477 atgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    |||||||| ||||||||||| || ||||||| ||||||| | ||||| | ||||||||||||| ||| ||||||    
T  27616394 atgatatc-ttgttttagaacttgttctaattaaataaactgctcaagtaagatgcttatgtacgtactttgat 27616322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 357 - 547
Target Start/End: Complemental strand, 46533043 - 46532854
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 456  Q
    ||||||||||| ||||| | | ||||| ||||| |||||||||||||||||| |||||| | ||||||||||||||||||||||| |||| || || |||    
T  46533043 agatacaagagctacatatattttgaggaatgttgatcaattaggggttataaacattacaattgattataacatttttagcttttttgacagcaggtga 46532944  T
Q  457 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    ||||| || |||||||||||| | |||| || |||||||| |||||| |||||||||| || ||||| |||||||||||| ||||||||||    
T  46532943 ataaacaatggtcaaatactacgttatc-ttattttagaactttttcaaatgaaataacttcctcaagttagatgcttatatatgtatttt 46532854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 417 - 517
Target Start/End: Complemental strand, 22290991 - 22290892
Alignment:
Q  417 agttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaat 516  Q
    |||||||||||  |||||||||||| |||||||||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||    
T  22290991 agttgattatataatttttagcttttttgatagtagattaataaataaaggtcaaatacaatgatatc-ttgttgtagaactttttttaatgaaataaat 22290893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 420 - 543
Target Start/End: Original strand, 45215999 - 45216121
Alignment:
Q  420 tgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttc 519  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||| || || ||||| |||||||||||| ||||||| |    
T  45215999 tgattatatcatttttagcttttttgacagtagatgaataaataaaggtcaaataatatgacatc-ttattgtagaactttttctaatgacataaattgc 45216097  T
Q  520 tcaacttagatgcttatgtatgta 543  Q
    |||| |||| || |||| ||||||    
T  45216098 tcaagttagttgtttatatatgta 45216121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 392 - 548
Target Start/End: Original strand, 11809286 - 11809440
Alignment:
Q  392 atcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttt 491  Q
    |||||| |||||| |||||||||||| ||||||| ||| ||||||  ||| ||||  |||||||||  |||||||| ||||||||||  |||| |||||     
T  11809286 atcaatgaggggtcatagacattaaatttgattacaacctttttaaattttttgacggtagatgaagtaataaaggccaaatactattgtatc-ttgtta 11809384  T
Q  492 tagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttg 548  Q
    || |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||    
T  11809385 tataaattttt-taatgaaataaattgctcaagttagaagcatatgtatgtattttg 11809440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 380 - 548
Target Start/End: Original strand, 11820525 - 11820691
Alignment:
Q  380 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatg 479  Q
    |||||||||| ||||||  | |||||||||||||||||| |||||| ||||||||||   || || ||||||||| ||||||||||| |||||| ||||     
T  11820525 tgagaaatgttgatcaacgaagggttatagacattaaagatgattacaacatttttaaaatttttaatagtagataaataaataaagctcaaatgctatt 11820624  T
Q  480 atatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttg 548  Q
     |||  ||||  ||||| |||||  ||||||||||||| ||||| |||||||| |||||||||||||||    
T  11820625 gtat-gttgtcatagaacttttt-gaatgaaataaattgctcaagttagatgcatatgtatgtattttg 11820691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 359 - 530
Target Start/End: Original strand, 32716489 - 32716658
Alignment:
Q  359 atacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaat 458  Q
    ||||||||||||||| | | ||||||||| | ||| ||| |||| |||||||||||||| ||||||  | |||||||| |||| | |||||| |||||||    
T  32716489 atacaagagttacatatatattgagaaattttgat-aatgagggattatagacattaaaattgattgcaccatttttaactttttcgatagtggatgaat 32716587  T
Q  459 aaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagat 530  Q
    |||||||| |||||||||||  |||| ||||||||||| ||||| |||| ||| |||||  |||| ||||||    
T  32716588 aaataaagatcaaatactattgtatc-ttgttttagaactttttttaataaaacaaattattcaagttagat 32716658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 405 - 478
Target Start/End: Original strand, 44572487 - 44572560
Alignment:
Q  405 tatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactat 478  Q
    |||| |||||| | ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44572487 tatatacattacaattgattatatcatttttagcttttttgatagtagatgaataaataaaggtcaaatactat 44572560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 517
Target Start/End: Complemental strand, 6439914 - 6439769
Alignment:
Q  375 tgtgttgagaaatgtagatcaattaggggttatagacattaa----agttgattataacatttttagctttcttgatagtagatgaataaataaaggtca 470  Q
    ||||||||||||||| ||||| | ||| ||||||||||||||    ||||||||| |||||||||| |||| | |||||||| |||||||||| | ||||    
T  6439914 tgtgttgagaaatgttgatcattgaggagttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatgtca 6439815  T
Q  471 aatactatgatatctttgttttagaaatttttctaatgaaataaatt 517  Q
    ||||||||  |||| |||| ||| || |||||  |||||||||||||    
T  6439814 aatactatcgtatc-ttgtgttataacttttttcaatgaaataaatt 6439769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 399 - 550
Target Start/End: Complemental strand, 27994052 - 27993899
Alignment:
Q  399 aggggttatagacattaaagttgattataa---catttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttaga 495  Q
    |||| ||||||||||||||||| |||| ||   ||||||||  ||| | ||| ||||||| |||||||||| |||| | ||||  |||||| ||| ||||    
T  27994052 agggtttatagacattaaagtttattacaaatgcatttttaaatttttcgatggtagatggataaataaagatcaattgctattgtatctt-gttataga 27993954  T
Q  496 aatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    | ||| | |||||||||||||| ||||| ||| |||| |||||||||||||||||    
T  27993953 actttatttaatgaaataaattgctcaagttaaatgcatatgtatgtattttgat 27993899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 548
Target Start/End: Original strand, 11816926 - 11817013
Alignment:
Q  459 aaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttg 548  Q
    ||||||||||||||||| ||  |||||| ||| || |||||||| |||||||||||||| ||||  ||||||||||||||||||||||||    
T  11816926 aaataaaggtcaaatacgattgtatctt-gttatataaattttt-taatgaaataaattgctcatgttagatgcttatgtatgtattttg 11817013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 548
Target Start/End: Original strand, 11810979 - 11811077
Alignment:
Q  448 agtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    ||||||| ||| ||||||||||||||| |||  |||||| |||  | |||||||| |||||||||||||| ||||| ||||| || ||||||||||||||    
T  11810979 agtagataaattaataaaggtcaaatattattgtatctt-gttagataaattttt-taatgaaataaattgctcaagttagaggcatatgtatgtatttt 11811076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 547
Target Start/End: Original strand, 11812611 - 11812670
Alignment:
Q  486 ttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    ||||| |||||||||||  ||||||||||||| ||||| |||||||| ||||||||||||||    
T  11812611 ttgttatagaaattttt--aatgaaataaattgctcaaattagatgcatatgtatgtatttt 11812670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 22291241 - 22291172
Alignment:
Q  111 ctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactcc 180  Q
    |||||||||||| | |||| ||| ||||| | |||||||||||| ||||||||| |||||| ||||||||    
T  22291241 ctatgaagcacggaaacctctaggactaggcatgtcgcagtgtccgacacgcgtcggtgtccgacactcc 22291172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 550
Target Start/End: Original strand, 44182664 - 44182764
Alignment:
Q  449 gtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttg 548  Q
    |||||| ||||||||||||||| |||||||||||| ||| ||||||||  |||| | ||||||||||||  |||   |||||  |||| |||||||||||    
T  44182664 gtagataaataaataaaggtcatatactatgatat-tttattttagaatattttttgatgaaataaattgttcatactagatatttatatatgtattttg 44182762  T
Q  549 at 550  Q
    ||    
T  44182763 at 44182764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 404
Target Start/End: Complemental strand, 10678584 - 10678435
Alignment:
Q  253 ctagaactggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacata 352  Q
    |||| |||||||||||||||||||||| |||||||| ||  | |||  ||||| |||||||||||| |||| ||         | ||| ||||| |||||    
T  10678584 ctaggactggtgtccgacacctatataacactcatacgaaccgtgtctgacaactcagacaaatatttaaa-catttctttt-tctcttgcttccacata 10678487  T
Q  353 tcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattaggggt 404  Q
     || ||||||||||||||| | ||| ||||||||| | ||||||||||||||    
T  10678486 ccgtagatacaagagttacgtatgttttgagaaatattgatcaattaggggt 10678435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 474
Target Start/End: Original strand, 11814414 - 11814489
Alignment:
Q  399 aggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaata 474  Q
    |||||||||||||||||| |||||||| | ||||||||  ||| ||||||||| || ||  |||| ||||||||||    
T  11814414 aggggttatagacattaatgttgattacaccatttttaatttttttgatagtatataaaataatagaggtcaaata 11814489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 46014643 - 46014521
Alignment:
Q  114 tgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactccactcctatgacacttgtacgatagttgtaggac 213  Q
    ||||||||||||||||  || ||||| ||||||||||||||  |||| |||||||||| ||      |||||||||||||| |||||| |  ||| ||||    
T  46014643 tgaagcacgaacacctccaggactaggcgtgtcgcagtgtccaacacccgttggtgtccga-----aactcctatgacactcgtacgacatgtgtcggac 46014549  T
Q  214 aactaagaccagtgtcatagataaaatt 241  Q
    ||| ||||||  |||| || ||||||||    
T  46014548 aaccaagaccgttgtcctaaataaaatt 46014521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 542
Target Start/End: Complemental strand, 48598474 - 48598314
Alignment:
Q  380 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatag-tagatgaataaataaaggtcaaatactat 478  Q
    |||||||||| ||||||| |||| | ||||| |||||||||| ||| ||| |||||   ||| ||||||  ||| || ||||||||||||||||||||||    
T  48598474 tgagaaatgttgatcaatgaggg-tcatagatattaaagttggttacaacgttttttaattttttgatatatag-tggataaataaaggtcaaatactat 48598377  T
Q  479 gatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgt 542  Q
      ||||  |||| || ||||| || ||||||||| ||||  |||| |||||||| |||||||||    
T  48598376 tgtatc-gtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgt 48598314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 10678719 - 10678674
Alignment:
Q  109 tcctatgaagcacgaacacctatagtactagccgtgtcgcagtgtc 154  Q
    ||||||||||||||||||||| ||| |||| ||||||||| |||||    
T  10678719 tcctatgaagcacgaacacctctaggactaaccgtgtcgcggtgtc 10678674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 45215898 - 45215963
Alignment:
Q  261 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaaca 326  Q
    |||||||||||||||| || |||||||| ||| | ||| ||||||  ||| |||||||||||||||    
T  45215898 ggtgtccgacacctatgtaacactcatacgagccgtgtcggacaacccagtcaaatatctaaaaca 45215963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 4e-58; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 357 - 547
Target Start/End: Complemental strand, 26576250 - 26576061
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 456  Q
    ||||||||||||||||| ||| ||||||||||| |||| ||||| |||||||||||||| ||||||||||| | ||||||||||  ||||||||||||||    
T  26576250 agatacaagagttacatatgttttgagaaatgttgatcgattagtggttatagacattatagttgattatatcgtttttagcttatttgatagtagatga 26576151  T
Q  457 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    |||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||||| ||||| ||||||| |||| ||||||||||    
T  26576150 ataaataaaggtcaaatactatgatatc-ttgttgtagaactttttctaatgacataaattgctcaagttagatgtttatatatgtatttt 26576061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 357 - 547
Target Start/End: Original strand, 34409554 - 34409743
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttct-tgatagtagatg 455  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |||  ||||||     
T  34409554 agatacaagagttacatatgttttgagaaatgttgatcaattaggggttatagacattatagttgattatatcatttttagctttttctgacggtagata 34409653  T
Q  456 aataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    ||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||| | |||||| ||||| ||||||| |||| ||||||||||    
T  34409654 aataaataaaggtcaaatactataatatc-ttgttgtagaactttttctaatg-actaaattgctcaagttagatgtttatatatgtatttt 34409743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 363 - 543
Target Start/End: Original strand, 44649945 - 44650126
Alignment:
Q  363 aagagttacatgtgtgttgagaaatgtagatcaattagggg-ttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaa 461  Q
    |||||||| || |||||||| |||||| ||||||||||||| ||||||| |||||||||||||| |||||||||| |||| |||||||||||||||||||    
T  44649945 aagagttatatatgtgttgaaaaatgttgatcaattaggggcttatagaaattaaagttgattacaacatttttaacttttttgatagtagatgaataaa 44650044  T
Q  462 taaaggtcaaatactatgatatctttgttttagaaatttttct-aatgaaataaatttctcaacttagatgcttatgtatgta 543  Q
    |||||||||||| ||||| |||| |||||||| || ||||| | ||||||||||||| ||||| ||| |||||||||||||||    
T  44650045 taaaggtcaaattctatggtatc-ttgttttataattttttttcaatgaaataaattgctcaatttatatgcttatgtatgta 44650126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 399 - 547
Target Start/End: Complemental strand, 9929778 - 9929631
Alignment:
Q  399 aggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaat 498  Q
    ||||||||||||||||| ||||||| ||| |||||| ||| || |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |    
T  9929778 aggggttatagacattacagttgatcatatcattttgagcatttttgatagtagatgaataaataaaggtcaaatactatgatatc-ttgttgtagaact 9929680  T
Q  499 ttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    ||||||||||||||||||| ||||| ||||||| |||| ||||||||||    
T  9929679 ttttctaatgaaataaattgctcaaattagatgtttatatatgtatttt 9929631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 357 - 547
Target Start/End: Complemental strand, 27004227 - 27004035
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgat---agtaga 453  Q
    |||||||||||||  || ||| |||| |||||| |||||||||||||||||  |||||| ||||||||||| ||||||||| ||| ||  |   ||||||    
T  27004227 agatacaagagttgtatatgttttgaaaaatgttgatcaattaggggttatgtacattatagttgattatatcatttttagtttttttttttacagtaga 27004128  T
Q  454 tgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    ||||||||||||||||||||||||||||||| |||||  |||| ||||| |||||||||||||||||||| ||||||| |||| ||||||||||    
T  27004127 tgaataaataaaggtcaaatactatgatatc-ttgttggagaactttttttaatgaaataaatttctcaagttagatgtttatatatgtatttt 27004035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 431 - 547
Target Start/End: Original strand, 32200870 - 32200985
Alignment:
Q  431 tttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagat 530  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||||| ||||| ||||||    
T  32200870 tttttagcttttttgatagtagatgaataaataaaggtcaaatactatgatatc-ttgttgtagaactttttctaatgacataaattgctcaagttagat 32200968  T
Q  531 gcttatgtatgtatttt 547  Q
    | |||| ||||||||||    
T  32200969 gtttatatatgtatttt 32200985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 357 - 550
Target Start/End: Original strand, 4748053 - 4748245
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttataga--cattaaagttgattataacatttttagctttcttgatagtagat 454  Q
    |||| ||||||||||||||||  || ||||||| ||||| | ||||||||||||  ||||||||||||||| | ||||||||| ||  |  |||| ||||    
T  4748053 agatccaagagttacatgtgt--tgtgaaatgttgatcactgaggggttatagagacattaaagttgattacagcatttttagtttgttcaatagaagat 4748150  T
Q  455 gaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    ||||||||||||||||||||||||  || | ||||||||||| |||||| ||||||||||||| ||||| ||||| |   |||||| |||||||||    
T  4748151 gaataaataaaggtcaaatactatcgtaac-ttgttttagaactttttccaatgaaataaattgctcaagttagaagtacatgtatctattttgat 4748245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 357 - 548
Target Start/End: Complemental strand, 17651447 - 17651258
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 456  Q
    |||| ||||||||| | |||||| || |||||| ||||||  || |||||||||||||||||||||||| ||| | ||||  ||| |  ||||||||||     
T  17651447 agattcaagagttaaaggtgtgt-gaaaaatgttgatcaacgagaggttatagacattaaagttgattacaacgtatttaagtttttcaatagtagatgg 17651349  T
Q  457 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttg 548  Q
    ||||||||||| |||||| |||  || ||| ||| ||||| || || |||||||||||||| ||||| |||||||| |||||||||||||||    
T  17651348 ataaataaaggccaaatattattgtaactt-gttatagaacttcttgtaatgaaataaattgctcaagttagatgcatatgtatgtattttg 17651258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 412 - 531
Target Start/End: Complemental strand, 13037442 - 13037324
Alignment:
Q  412 attaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaa 511  Q
    |||| |||||| |||| | ||||||  ||| |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||| ||||| |    
T  13037442 attatagttgactatatcgtttttaatttttttgatagtagatgaataaataaagatcaaatactatgatatc-ttgttgtagaactttttcaaatgaca 13037344  T
Q  512 taaatttctcaacttagatg 531  Q
    |||||| ||||| |||||||    
T  13037343 taaattgctcaagttagatg 13037324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 357 - 438
Target Start/End: Original strand, 15990041 - 15990123
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaa-ttaggggttatagacattaaagttgattataacatttttagc 438  Q
    ||||| ||||||||||| ||||||||||||||| || ||| || ||||||||||| ||||||||| || | ||||||||||||    
T  15990041 agatataagagttacatatgtgttgagaaatgttgaccaatttgggggttatagaaattaaagttaatcacaacatttttagc 15990123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 414
Target Start/End: Complemental strand, 13039165 - 13039011
Alignment:
Q  260 tggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacatatcgcaga 359  Q
    ||||||||||||| | |||| |||||||||||||  |||  ||||  ||||||||||||||||||||         | ||| |||||  || | |  |||    
T  13039165 tggtgtccgacacatttataacactcatatgagttgtgtcagacagctcagacaaatatctaaaacaatttttttatctcttgcttccgcacaccataga 13039066  T
Q  360 tacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacatt 414  Q
    |||||||||||||| |||  |||||||||| |||||||||| ||||||| |||||    
T  13039065 tacaagagttacatatgttatgagaaatgttgatcaattagtggttataaacatt 13039011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 550
Target Start/End: Original strand, 16661253 - 16661342
Alignment:
Q  460 aataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    ||||||||| |||||||||  |||||| ||||||||| ||||| |||| ||||||||| ||||| |||||| |  ||||||||||| ||||    
T  16661253 aataaaggttaaatactatcctatctt-gttttagaactttttttaataaaataaattgctcaagttagatacacatgtatgtattctgat 16661342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 34409459 - 34409524
Alignment:
Q  261 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaaca 326  Q
    ||||||||||||||||||| |||||||| ||||  ||||| |||| ||| |||| |||||||||||    
T  34409459 ggtgtccgacacctatataacactcatacgagttgtgttgaacaactcaaacaactatctaaaaca 34409524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 41849420 - 41849351
Alignment:
Q  111 ctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactcc 180  Q
    |||||||||||| |||||| ||| | ||| |||||||| ||||| ||||||||| |||||| ||||||||    
T  41849420 ctatgaagcacggacacctctagaattaggcgtgtcgcggtgtcagacacgcgtcggtgtccgacactcc 41849351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 41849286 - 41849228
Alignment:
Q  258 actggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaat 316  Q
    |||||||||||||||||||||| |||| ||||||| | ||| |||||| ||| ||||||    
T  41849286 actggtgtccgacacctatataacacttatatgaggcgtgtcggacaactcaaacaaat 41849228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 17651536 - 17651476
Alignment:
Q  261 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatcta 321  Q
    |||||||||||| |||||| |||| ||||||| | ||| |||||| | |||||||||||||    
T  17651536 ggtgtccgacacttatataacacttatatgaggcgtgtcggacaacttagacaaatatcta 17651476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 32200608 - 32200660
Alignment:
Q  109 tcctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacg 161  Q
    |||||||||||||| |||||| ||| ||||| |||||||| ||||| ||||||    
T  32200608 tcctatgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacacg 32200660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 550
Target Start/End: Complemental strand, 41849068 - 41849016
Alignment:
Q  498 tttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    ||||| |||||||||||| | ||||| |||||| | |||||||||||||||||    
T  41849068 tttttttaatgaaataaagtgctcaagttagattcatatgtatgtattttgat 41849016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 6e-57; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 359 - 550
Target Start/End: Original strand, 32676610 - 32676799
Alignment:
Q  359 atacaagagttacatgtgtgttgagaaatgtagatcaattaggggt-tatagacattaaagttgattataacatttttagctttcttgatagtagatgaa 457  Q
    ||||||||||||||| ||| ||||||||||| | |||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  32676610 atacaagagttacatatgttttgagaaatgttgttcaattagggggatatagacattaaagttgattataacatttttaacttttttgatagtagatgaa 32676709  T
Q  458 taaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    ||||| ||| ||||||| ||||||||| |||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  32676710 taaat-aagatcaaataatatgatatc-ttgttttataactttttctaatgaaataaattgctcaa-ttagatgcttatgtatgtattttgat 32676799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 261 - 479
Target Start/End: Complemental strand, 40838186 - 40837970
Alignment:
Q  261 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacatatcgcagat 360  Q
    ||||||||||| ||||||| ||||||||  |||| ||| |||||| |||||||||| |||||||||        | | || ||||| | ||| || ||||    
T  40838186 ggtgtccgacatctatataacactcatacaagtcgtgtcggacaactcagacaaatgtctaaaacattttttttcct-cttgcttccagataccgtagat 40838088  T
Q  361 acaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataa 460  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||| ||| |||||| |||| |||||||||||||||||||| ||||||||||||||||||    
T  40838087 acaagagttacatatgttttgagaaatgttgatcaattaggggtaataaacattatagtttattataacatttttagcttt-ttgatagtagatgaataa 40837989  T
Q  461 ataaaggtcaaatactatg 479  Q
    |||||||||||||| ||||    
T  40837988 ataaaggtcaaatattatg 40837970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 384 - 547
Target Start/End: Original strand, 38989252 - 38989412
Alignment:
Q  384 aaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatat 483  Q
    |||||| |||||||||||||||||||||||||   ||||||||| ||||||||  | | ||||||||||||||||||||||| |||||||||||||||||    
T  38989252 aaatgttgatcaattaggggttatagacattat--ttgattatatcatttttaaatcttttgatagtagatgaataaataaaagtcaaatactatgatat 38989349  T
Q  484 ctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    | ||||| ||||| |||||||||||| ||||||| ||||| ||||||| | || ||||||||||    
T  38989350 c-ttgttgtagaactttttctaatgacataaattgctcaagttagatgttgatatatgtatttt 38989412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 463 - 550
Target Start/End: Complemental strand, 40837889 - 40837803
Alignment:
Q  463 aaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    |||||||||||||||  ||||||| ||||||||| ||||||||||||||||| || ||||| |||||||||||| |||||||||||||    
T  40837889 aaaggtcaaatactacaatatctt-gttttagaactttttctaatgaaataatttgctcaagttagatgcttatatatgtattttgat 40837803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 357 - 550
Target Start/End: Original strand, 9148972 - 9149163
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 456  Q
    ||||||||||||||| | ||  || ||||||||||||||||| | ||||||||||||||||||||  |||||||||||||||||| |||||||||||| |    
T  9148972 agatacaagagttacgtatga-ttaagaaatgtagatcaattggtggttatagacattaaagttggctataacatttttagcttttttgatagtagataa 9149070  T
Q  457 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    |||||||||||| ||||||||||||||| |||||||| |  |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  9149071 ataaataaaggtaaaatactatgatatc-ttgttttaaacttttttctaatgaaataaatttctcaagttagattcttatatatgtattttgat 9149163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 344 - 550
Target Start/End: Original strand, 48632542 - 48632748
Alignment:
Q  344 ttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaatta-ggggttatagacattaaagttgattataacatttttagctttc 442  Q
    ||||||| | || ||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||| |||||||||||     
T  48632542 ttctacacaccgtagatacaagagttgcatatgtgttgagaaatgttgatcaattacggggttatagaaattaaagttgattacaacgtttttagctttt 48632641  T
Q  443 ttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgt 542  Q
    ||||||||||| ||||||||||||||||||||||||| |||| ||||||||||| |||||  ||||||||||| | ||||| ||| || ||||||||||     
T  48632642 ttgatagtagaagaataaataaaggtcaaatactatggtatc-ttgttttagaacttttttcaatgaaataaactgctcaagttaaattcttatgtatga 48632740  T
Q  543 attttgat 550  Q
    ||||||||    
T  48632741 attttgat 48632748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 357 - 547
Target Start/End: Complemental strand, 32741036 - 32740850
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 456  Q
    ||||||||||||||||| ||| ||| ||||||| |||||||| |||||||||||||||| | ||||||||  ||||||||||||| ||||| ||||||||    
T  32741036 agatacaagagttacatatgttttgtgaaatgttgatcaattgggggttatagacattacaattgattat--catttttagcttttttgatggtagatga 32740939  T
Q  457 ataaataaaggtcaaatac--tatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    |||||||||||||||||||  ||||||||| |||||   ||| |||||||||| ||||||||| ||||| ||||||| |||| ||||||||||    
T  32740938 ataaataaaggtcaaatactatatgatatc-ttgtt---gaactttttctaattaaataaattgctcaagttagatgtttatatatgtatttt 32740850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 261 - 550
Target Start/End: Complemental strand, 23432155 - 23431864
Alignment:
Q  261 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacatatcgcagat 360  Q
    |||||||||||| |||||| |||||||| ||| | ||| |||||| ||||| ||||||||| ||||         | ||||  ||| |||||  | ||||    
T  23432155 ggtgtccgacacttatataacactcatacgagccgtgtcggacaactcagataaatatctagaacattttt----tctctcatttccacatacagaagat 23432060  T
Q  361 acaagagttacatgtgtgttgagaaatgtagatcaattaggggtt--------atagacattaaagttgattataacatttttagctttcttgatagtag 452  Q
    ||||||||||||| ||| ||||||| ||| || |||||||||| |        ||||||||||  || |||||||||||||||| |||| ||||||||||    
T  23432059 acaagagttacatatgttttgagaagtgt-gaacaattagggggtaatagacaatagacattaccgtagattataacatttttaacttttttgatagtag 23431961  T
Q  453 atgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    |||||||||| || ||||||||||| ||||| |||||||||||| ||||||||||||||||| || ||||| |||||||||||| |||||||||||||    
T  23431960 atgaataaatgaatgtcaaatactacgatat-tttgttttagaactttttctaatgaaataacttgctcaagttagatgcttatatatgtattttgat 23431864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 379 - 550
Target Start/End: Complemental strand, 3955117 - 3954947
Alignment:
Q  379 ttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactat 478  Q
    ||||||||||| ||||||  |||||||| ||| |||||||||||||| ||| ||||||||||| | ||||||||||| ||||||||||||||||||| ||    
T  3955117 ttgagaaatgttgatcaacaaggggttacagagattaaagttgattacaacgtttttagctttttcgatagtagatggataaataaaggtcaaatacgat 3955018  T
Q  479 gatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
      |||| || |||||||| ||||| |||||||||||||| ||||| ||||||||  ||||||||||| ||||    
T  3955017 cgtatc-ttattttagaactttttttaatgaaataaattgctcaagttagatgcacatgtatgtattctgat 3954947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 380 - 550
Target Start/End: Complemental strand, 3387821 - 3387652
Alignment:
Q  380 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatg 479  Q
    |||||||||| ||||||| | ||||||||||||||||||||||||| ||| ||||||  ||| | ||| ||||||||||||||||||||||||||||||     
T  3387821 tgagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgtttttaaatttttcgatggtagatgaataaataaaggtcaaatactatt 3387722  T
Q  480 atatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
     |||| ||||| ||||| ||||| |||| |||||||||  |||| ||| |||| |||||||||||||||||    
T  3387721 ttatc-ttgttatagaactttttttaataaaataaattgttcaagttaaatgcatatgtatgtattttgat 3387652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 416 - 547
Target Start/End: Complemental strand, 18476637 - 18476506
Alignment:
Q  416 aagttgattataacatttttagctttcttgatagtagatgaataaataaa-ggtcaaatactatgatatctttgttttagaaatttttctaatgaaataa 514  Q
    |||||||||| || |||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||| | ||||||| |||||||||||||||||    
T  18476637 aagttgattacaatatttttagcttttttgatagtagatgaataaataaaaggtcaaatactacgatatctt-gctttagaactttttctaatgaaataa 18476539  T
Q  515 atttctcaacttagatgcttatgtatgtatttt 547  Q
     || ||||| |||||||||||| ||||||||||    
T  18476538 cttgctcaagttagatgcttatatatgtatttt 18476506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 364 - 475
Target Start/End: Complemental strand, 126435 - 126323
Alignment:
Q  364 agagttacatgtgtgttgagaaatgtagatcaattagggg--ttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaa 461  Q
    |||||||||| ||| ||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||    
T  126435 agagttacatatgttttgagaaatgttgatcaattaggggggttatagacattaaagttgattataacatttttaacttt-ttaatagtagatgaataaa 126337  T
Q  462 taaaggtcaaatac 475  Q
    ||||||||||||||    
T  126336 taaaggtcaaatac 126323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 357 - 550
Target Start/End: Original strand, 7021541 - 7021737
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattag-gggttatagacatta--aagttgattataacatttttagctttctt-gatagtag 452  Q
    ||||| ||||||||||| ||||||||||||||| ||| |||||| |||||||||| ||||  |||||||||| ||||||||| ||||| || ||||||||    
T  7021541 agatataagagttacatatgtgttgagaaatgttgataaattagcgggttatagaaattataaagttgattacaacatttttggctttttttgatagtag 7021640  T
Q  453 atgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    || ||||||||||||||||||  | || ||| |||||||||||| |||||  ||| ||||||||| | ||| ||||||| |||||||| |||||||||    
T  7021641 ataaataaataaaggtcaaatcttgtggtat-tttgttttagaacttttttcaataaaataaattgcgcaagttagatgtttatgtatatattttgat 7021737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 399 - 550
Target Start/End: Original strand, 50127176 - 50127325
Alignment:
Q  399 aggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaat 498  Q
    |||||||||||||||||||||||| |  | |   ||||  ||| | ||||||||||||| ||||||||| ||||||||||  |||||| ||| ||||| |    
T  50127176 aggggttatagacattaaagttgaatgcagcgcatttaaatttttcgatagtagatgaa-aaataaaggccaaatactattgtatctt-gttatagaact 50127273  T
Q  499 ttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    || | ||||||||||||||  |||| |||||||| |||||||||||||||||    
T  50127274 ttatttaatgaaataaattgttcaagttagatgcatatgtatgtattttgat 50127325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 467 - 550
Target Start/End: Complemental strand, 125256 - 125174
Alignment:
Q  467 gtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    ||||||||||||||| |||| |||||| || ||||| |||||||||||||| ||||| |||||| ||| |||||||||||||||    
T  125256 gtcaaatactatgatttctt-gttttaaaactttttttaatgaaataaattgctcaagttagatacttgtgtatgtattttgat 125174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 380 - 550
Target Start/End: Complemental strand, 16426598 - 16426429
Alignment:
Q  380 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatg 479  Q
    |||||||||| ||||||  ||| ||||||||||||||||||||||| |     ||||  ||| |  ||| |||||  ||||||||||| ||||||||||     
T  16426598 tgagaaatgttgatcaacgaggagttatagacattaaagttgattacagtgcatttaaatttttcaataatagatagataaataaaggccaaatactatt 16426499  T
Q  480 atatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
     ||  |||||| ||||| || || ||||||| |||||| ||||| |||||||| |||||||||||||||||    
T  16426498 gtaa-tttgttatagaacttgttttaatgaagtaaattgctcaagttagatgcatatgtatgtattttgat 16426429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 421
Target Start/End: Complemental strand, 18488488 - 18488333
Alignment:
Q  267 cgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacatatcgcagatacaaga 366  Q
    ||||||||||||| || ||||| ||| | ||| |||||| || ||||||||| | |||||        || ||| ||||| |||||||| |||| |||||    
T  18488488 cgacacctatataacattcatacgagccatgtcggacaactctgacaaatatatgaaacattttttttctctcttgcttccacatatcgtagatccaaga 18488389  T
Q  367 gttacatgtgtgttgagaaatgtagatcaattagg-ggttatagacattaaagttg 421  Q
    ||||||||||| ||||||||||| ||| |||| || ||| |||||||||| |||||    
T  18488388 gttacatgtgttttgagaaatgttgattaatttggaggtaatagacattacagttg 18488333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 4e-52; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 343 - 550
Target Start/End: Complemental strand, 11410887 - 11410680
Alignment:
Q  343 cttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattaggggtta-tagacattaaagttgattataacatttttagcttt 441  Q
    |||| ||||| || ||||||||||||||||| ||| ||||||||||| ||||||||||||| || |||| ||||  ||||||||||||| ||||||| ||    
T  11410887 cttccacataccgtagatacaagagttacatatgttttgagaaatgttgatcaattagggggtaatagatattattgttgattataacagttttagcctt 11410788  T
Q  442 cttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatg 541  Q
     |||||||||||||||||||||||||| |||||||| |||||| || |||||||| ||||||||||||||||| || ||||| |||||||||||  ||||    
T  11410787 tttgatagtagatgaataaataaaggttaaatactacgatatc-ttcttttagaactttttctaatgaaataacttgctcaagttagatgcttaaatatg 11410689  T
Q  542 tattttgat 550  Q
    |||||||||    
T  11410688 tattttgat 11410680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 357 - 531
Target Start/End: Original strand, 43921916 - 43922089
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 456  Q
    ||||||||||||||||| ||| ||||||||||| ||||||| |||| | || ||||||| | ||||||||||||||||||||||| |||||| |||||||    
T  43921916 agatacaagagttacatatgttttgagaaatgttgatcaatcagggttaattgacattacaattgattataacatttttagcttttttgatattagatga 43922015  T
Q  457 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatg 531  Q
    |||||||||| |||||||||| ||| || ||||||||||| ||||||||||||||||| || ||||| |||||||    
T  43922016 ataaataaagatcaaatactacgatgtc-ttgttttagaactttttctaatgaaataacttgctcaagttagatg 43922089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 369 - 550
Target Start/End: Original strand, 21408844 - 21409025
Alignment:
Q  369 tacatgtgtgttgagaaatgtagatcaattaggggttat-agacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaagg 467  Q
    ||||| ||| ||||||||||| ||||||||||||| ||  | |||||| | |||||||||||||||||| | || || ||||||||||||||||||||||    
T  21408844 tacatatgttttgagaaatgttgatcaattagggggtaacaaacattacaattgattataacatttttaaccttttttatagtagatgaataaataaagg 21408943  T
Q  468 tcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    |||||||||| |||||| || |||||||| ||||||||||||||||| || ||||| |||||| ||||| | |||||||||||    
T  21408944 tcaaatactacgatatc-ttattttagaattttttctaatgaaataacttgctcaaattagattcttatatttgtattttgat 21409025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 550
Target Start/End: Complemental strand, 27063930 - 27063737
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaatt-aggggttatagacattaaagttgattataacatttttagctttcttgatagtagatg 455  Q
    ||||| ||||||||||| | ||||||||||||| |||||||| ||| |||||||| ||| ||||| |||| |||||||||||||||  ||| ||||||||    
T  27063930 agatataagagttacatatatgttgagaaatgttgatcaatttaggagttatagaaatttaagttaattacaacatttttagcttttatgacagtagatg 27063831  T
Q  456 aataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    ||||||||||||||| ||| |||| |||| |||||||||||  |||| ||| |||||||| | ||||| |||||||||||  ||||| |||||||    
T  27063830 aataaataaaggtcatatattatggtatc-ttgttttagaacgttttttaaagaaataaactgctcaagttagatgcttaaatatgtgttttgat 27063737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 357 - 542
Target Start/End: Original strand, 10516138 - 10516323
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggtta-tagacattaaagttgattataacatttttagctttcttgatagtagatg 455  Q
    ||||||||||||||||| ||| || | ||||||  |||||||||||| || || |||||| || | ||||||||||||||| | || ||||||| || ||    
T  10516138 agatacaagagttacatatgttttaaaaaatgttaatcaattagggggtaatatacattatagcttattataacatttttaacctttttgataggagttg 10516237  T
Q  456 aataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgt 542  Q
    ||||||||| |||||||||||| |||||| || |||||||| ||||||||||||||||| || ||||| ||| |||||||| |||||    
T  10516238 aataaataatggtcaaatactacgatatc-ttattttagaactttttctaatgaaataacttgctcaagttatatgcttatctatgt 10516323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 269 - 486
Target Start/End: Complemental strand, 26565577 - 26565359
Alignment:
Q  269 acacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaaacannnnnnnnctttctcgcttctacatatcgcagatacaagagt 368  Q
    ||||||||||| |||||||| ||| | ||| |||||| ||||||||||||||||||||        || ||| ||||| |||||||  ||||| ||||||    
T  26565577 acacctatataacactcatacgagccgtgtcggacaactcagacaaatatctaaaacattttttt-ctctcttgcttccacatatcttagatataagagt 26565479  T
Q  369 tacatgtgtgttgagaaatgtagatcaattaggg-gttatagacattaaagttgattataacatttttag-ctttcttgatagtagatgaataaataaag 466  Q
    ||||| ||| || |||||||| ||||| |||||| || |||||||||| |||| |||||||||||||||| |||| ||||  ||| ||||  ||||||||    
T  26565478 tacatatgtttttagaaatgttgatcatttagggagtaatagacattacagttaattataacatttttagccttttttgacggtaaatgagaaaataaag 26565379  T
Q  467 gtcaaatactatgatatctt 486  Q
     |||||||||| ||||||||    
T  26565378 atcaaatactacgatatctt 26565359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 357 - 542
Target Start/End: Original strand, 10657411 - 10657595
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatag-acattaaagttgattataacatttttagctttcttgatagtagatg 455  Q
    |||||||||| |||||| ||| |||| |||||| |||||||||| || || |  |||||| |  ||||||||||||||||| |||| |||| || || ||    
T  10657411 agatacaagatttacatatgttttgaaaaatgttgatcaattagaggctaaaatacattacatatgattataacatttttaacttttttga-aggagttg 10657509  T
Q  456 aataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgt 542  Q
    ||||||||||||||||||  || |||||||| ||||||||| |||||||||| |||||| || || || ||| |||||||| |||||    
T  10657510 aataaataaaggtcaaattatacgatatctt-gttttagaactttttctaataaaataacttacttaagttatatgcttatctatgt 10657595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 358 - 473
Target Start/End: Original strand, 17715817 - 17715934
Alignment:
Q  358 gatacaagagttacatgtgtgttgagaaatgtagatcaatta-ggggttatagacattaaagttgattataacatttttagc-tttcttgatagtagatg 455  Q
    |||||||||||||||| |||||||| ||||||  |||||||| ||||||||||| |||||||||||||| ||  ||||| || ||| || ||| ||||||    
T  17715817 gatacaagagttacatatgtgttgataaatgtgtatcaattatggggttatagaaattaaagttgattacaatgtttttggcttttttttataatagatg 17715916  T
Q  456 aataaataaaggtcaaat 473  Q
    ||||||||||||||||||    
T  17715917 aataaataaaggtcaaat 17715934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 358 - 473
Target Start/End: Original strand, 19017046 - 19017163
Alignment:
Q  358 gatacaagagttacatgtgtgttgagaaatgtagatcaatta-ggggttatagacattaaagttgattataacatttttagc-tttcttgatagtagatg 455  Q
    |||||||||||||||| |||||||| ||||||  |||||||| ||||||||||| |||||||||||||| ||  ||||| || ||| || ||| ||||||    
T  19017046 gatacaagagttacatatgtgttgataaatgtgtatcaattatggggttatagaaattaaagttgattacaatgtttttggcttttttttataatagatg 19017145  T
Q  456 aataaataaaggtcaaat 473  Q
    ||||||||||||||||||    
T  19017146 aataaataaaggtcaaat 19017163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 342 - 468
Target Start/End: Complemental strand, 14218604 - 14218476
Alignment:
Q  342 gcttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattaggggtta-tagacattaaagttgattataacatttttag-ct 439  Q
    ||||| ||||| || ||| |||||||| |||| | | |||| |||||| ||||||||||||| || ||||||||| |||||||||||||||||||||  |    
T  14218604 gcttccacataccgtagacacaagagtcacatatattttgataaatgttgatcaattagggggtaatagacattacagttgattataacatttttagttt 14218505  T
Q  440 ttcttgatagtagatgaataaataaaggt 468  Q
    || || ||||||||| |||||||||||||    
T  14218504 ttttttatagtagataaataaataaaggt 14218476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 381 - 474
Target Start/End: Complemental strand, 29697116 - 29697023
Alignment:
Q  381 gagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaata 474  Q
    ||||||||| | ||||  ||||||||||||||||||| |||||| ||||||||||||||||   ||||| ||||| |||||||||| |||||||    
T  29697116 gagaaatgttgttcaaggaggggttatagacattaaaattgattctaacatttttagcttttacgatagcagatgtataaataaagctcaaata 29697023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 443 - 504
Target Start/End: Original strand, 2227280 - 2227340
Alignment:
Q  443 ttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttct 504  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||    
T  2227280 ttgatagtagatgaataaataaaggtcaaatactatgacatc-ttgttgtagaactttttct 2227340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 502
Target Start/End: Complemental strand, 49860546 - 49860462
Alignment:
Q  417 agttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaattttt 502  Q
    |||||||||||| |||||||||| | |||||||||||| |||||||||| ||||||||| |  ||||| ||||||||||| |||||    
T  49860546 agttgattataagatttttagctcttttgatagtagataaataaataaatgtcaaataccactatatc-ttgttttagaacttttt 49860462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 43921666 - 43921791
Alignment:
Q  111 ctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacactccactcctatgacacttgtacgatagttgtag 210  Q
    |||||||||||| |||||| ||| |||||||||||| | ||||| ||||||| | |||||| ||     ||||||||||||||||||  || |  ||| |    
T  43921666 ctatgaagcacggacacctctaggactagccgtgtcacggtgtccgacacgcttcggtgtccga-----cactcctatgacacttgtctgacacgtgtcg 43921760  T
Q  211 gacaactaagaccagtgtcatagataaaatt 241  Q
    ||||||||| | | ||||| |||||||||||    
T  43921761 gacaactaaaatcggtgtcctagataaaatt 43921791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 49861174 - 49861099
Alignment:
Q  342 gcttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaatta-ggggttatagacattaa 416  Q
    ||||||||| | || |||||||||||||||||  || |||||| |||| ||||||||| ||||| |||||||||||    
T  49861174 gcttctacacaccgtagatacaagagttacataagttttgagatatgttgatcaattagggggtcatagacattaa 49861099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 25092126 - 25092175
Alignment:
Q  111 ctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacac 160  Q
    |||||||||||| |||||| ||| |||||  |||||||||||||||||||    
T  25092126 ctatgaagcacggacacctctaggactaggtgtgtcgcagtgtctgacac 25092175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 495
Target Start/End: Original strand, 27109376 - 27109424
Alignment:
Q  446 atagtagatgaataaataaaggtcaaatactatgatatctttgttttaga 495  Q
    |||||||||||||||||||| ||||||||||| ||| || ||||||||||    
T  27109376 atagtagatgaataaataaatgtcaaatactacgatttc-ttgttttaga 27109424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 495
Target Start/End: Original strand, 27109774 - 27109822
Alignment:
Q  446 atagtagatgaataaataaaggtcaaatactatgatatctttgttttaga 495  Q
    ||||||||||||||||||||| ||||||||||  ||||| ||||||||||    
T  27109774 atagtagatgaataaataaagatcaaatactacaatatc-ttgttttaga 27109822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 10515952 - 10516012
Alignment:
Q  181 actcctatgacacttgtacgatagttgtaggacaactaagaccagtgtcatagataaaatt 241  Q
    ||||||||||||||||| |||||  ||| |||||||||| | ||||||| || ||||||||    
T  10515952 actcctatgacacttgtccgatacgtgttggacaactaaaatcagtgtcttaaataaaatt 10516012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 357 - 547
Target Start/End: Complemental strand, 28421230 - 28421041
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 456  Q
    ||||||||||||||||| | | ||||||||| | |||||||||| |||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||    
T  28421230 agatacaagagttacatatattttgagaaatcttgatcaattagtggttatagacattatagttgattatatcgtttttagcttttttgatagtagatga 28421131  T
Q  457 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    |||||||||||||||||  ||||||||| ||||| || || |||||||||||| ||||||| ||||| ||| ||| |||| ||||||||||    
T  28421130 ataaataaaggtcaaatcatatgatatc-ttgttgtaaaactttttctaatgacataaattgctcaagttaaatgtttatatatgtatttt 28421041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 357 - 547
Target Start/End: Original strand, 15131941 - 15132129
Alignment:
Q  357 agatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatga 456  Q
    ||||||| ||||||||| ||| || |||||| | ||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||| |    
T  15131941 agatacaggagttacatatgtttttagaaatattgatcaattaggggttatagacattatagttgattatatcatttttagctttttcgatagtagataa 15132040  T
Q  457 ataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatttt 547  Q
    |||||||||| ||||||||||||||||| ||| | ||||| ||||| | ||| |||||||| ||||| |||||||  ||| ||||||||||    
T  15132041 ataaataaagatcaaatactatgatatc-ttgctgtagaactttttatcatg-aataaattgctcaagttagatgtctatatatgtatttt 15132129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 368 - 545
Target Start/End: Complemental strand, 44502469 - 44502293
Alignment:
Q  368 ttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaagg 467  Q
    |||||| ||| ||||||||||| |||  |||||||||||||||||||| |||||||||||  ||||||| |||| ||||||| |||||||||||||||||    
T  44502469 ttacatatgttttgagaaatgttgattgattaggggttatagacattatagttgattatattatttttaacttttttgatagcagatgaataaataaagg 44502370  T
Q  468 tcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtatt 545  Q
    ||||||| ||||||||| ||||| ||||| ||||| | |||||||||||| ||||| ||| ||| |||| ||||||||    
T  44502369 tcaaatagtatgatatc-ttgttgtagaactttttatgatgaaataaattgctcaagttaaatgtttatatatgtatt 44502293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 352 - 550
Target Start/End: Complemental strand, 1226250 - 1226053
Alignment:
Q  352 atcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattaggggtt-atagacattaaagttgattataacatttttagctttcttgatagt 450  Q
    |||| |||||||||||||| || |||||||||||||||  ||||||||| |||| ||||| |||||||||||||| ||||||||||  ||| ||||||||    
T  1226250 atcgtagatacaagagttaaatatgtgttgagaaatgttaatcaattagaggtttatagaaattaaagttgattacaacatttttaaattt-ttgatagt 1226152  T
Q  451 agatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    |||||||||||||||| ||||||||| || |||| |||||||| || |||||  ||||||||||||| || || ||| ||| |||  |||||||||||||    
T  1226151 agatgaataaataaagatcaaatactctggtatc-ttgttttataacttttttcaatgaaataaattgcttaatttatatgtttacatatgtattttgat 1226053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 424 - 550
Target Start/End: Original strand, 15850496 - 15850621
Alignment:
Q  424 tataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaa 523  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| |||||||| || ||||||||||||||||| || |||||    
T  15850496 tataacatttttagcttttttgatagtagatgaataaataaatgtcaaatactgtgatatc-ttgttttataactttttctaatgaaataatttgctcaa 15850594  T
Q  524 cttagatgcttatgtatgtattttgat 550  Q
     |||||| ||||| |||||||||||||    
T  15850595 attagatacttatatatgtattttgat 15850621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 381 - 550
Target Start/End: Original strand, 18393548 - 18393716
Alignment:
Q  381 gagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatga 480  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||| ||| ||||||  ||| ||||||||||||| ||||||||||||||||||||||      
T  18393548 gagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgtttttaaattttttgatagtagatggataaataaaggtcaaatactattt 18393647  T
Q  481 tatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    |||| ||||| || || ||||| |||| |||||||||  |||| ||| |||| |||||||||||| ||||    
T  18393648 tatc-ttgttataaaactttttttaataaaataaattgttcaagttaaatgcatatgtatgtattatgat 18393716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 430 - 545
Target Start/End: Complemental strand, 37855276 - 37855162
Alignment:
Q  430 atttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttaga 529  Q
    ||||||| | || |||||||||||||||||||||||||| ||||||||| ||||| |||||  | || ||||||| |||||||||||||||||| |||||    
T  37855276 atttttaacctttttgatagtagatgaataaataaaggttaaatactattatatc-ttgttgcataactttttctcatgaaataaatttctcaaattaga 37855178  T
Q  530 tgcttatgtatgtatt 545  Q
    || |||| ||||||||    
T  37855177 tgtttatatatgtatt 37855162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 384 - 550
Target Start/End: Complemental strand, 27401985 - 27401820
Alignment:
Q  384 aaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatat 483  Q
    |||||| ||||||  ||||||||||||||||||||||||||| ||| |||||   | | |  |||||||||| ||||||||||| ||||| ||||  |||    
T  27401985 aaatgttgatcaacgaggggttatagacattaaagttgattacaacgtttttttttctttcaatagtagatggataaataaaggccaaattctattgtat 27401886  T
Q  484 ctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    ||| ||| || || ||||| |||||||||||||| ||||| ||||||||  |||||| |||||||||    
T  27401885 ctt-gttatataactttttttaatgaaataaattgctcaagttagatgcagatgtatatattttgat 27401820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 358 - 546
Target Start/End: Original strand, 18603044 - 18603218
Alignment:
Q  358 gatacaagagttacatgtgtgttgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaa 457  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||   || ||||||| | ||||||||||||||||||||||| ||                 
T  18603044 gatacaagagttacatatgttttgagaaatgttgatcaattagggtgaattgacattacaattgattataacatttttagctttttt------------- 18603130  T
Q  458 taaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattt 546  Q
    ||||||||| |||||||||| ||||||  ||||||| || ||||||||||||||||| || || || ||||||| |||  |||||||||    
T  18603131 taaataaagatcaaatactacgatatc-gtgttttaaaactttttctaatgaaataacttgcttaagttagatgtttagatatgtattt 18603218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 523
Target Start/End: Original strand, 2889764 - 2889872
Alignment:
Q  414 taaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaata 513  Q
    ||||||||| || ||| ||||||  ||| | ||||||||||| ||||||||||| ||||||||||  |||| ||||| ||||  ||||| ||||||||||    
T  2889764 taaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatc-ttgttatagacctttttttaatgaaata 2889862  T
Q  514 aatttctcaa 523  Q
    |||| |||||    
T  2889863 aattgctcaa 2889872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 523
Target Start/End: Complemental strand, 3145371 - 3145263
Alignment:
Q  414 taaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaata 513  Q
    ||||||||| || ||| ||||||  ||| | ||||||||||| ||||||||||| ||||||||||  |||| ||||| ||||  ||||| ||||||||||    
T  3145371 taaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatc-ttgttatagacctttttttaatgaaata 3145273  T
Q  514 aatttctcaa 523  Q
    |||| |||||    
T  3145272 aattgctcaa 3145263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 465
Target Start/End: Complemental strand, 13097604 - 13097519
Alignment:
Q  380 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaa 465  Q
    |||||||||| ||||||  || |||||| ||||||||||||||||| |||||||||   ||| |  ||||||||||||||||||||    
T  13097604 tgagaaatgttgatcaacaagaggttatggacattaaagttgattaaaacattttttaatttttcaatagtagatgaataaataaa 13097519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 15131843 - 15131905
Alignment:
Q  261 ggtgtccgacacctatatagcactcatatgagtcttgttggacaattcagacaaatatctaaa 323  Q
    ||||||||||||||||||| ||||||||||||   ||| | |||| |||||||||||||||||    
T  15131843 ggtgtccgacacctatataacactcatatgagcagtgtcgaacaactcagacaaatatctaaa 15131905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 530
Target Start/End: Complemental strand, 3159963 - 3159848
Alignment:
Q  414 taaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaata 513  Q
    |||||||||||| ||| | ||||  ||| | |||| |||||| ||||||||||| ||||||||||  || | ||||| ||||  ||||| ||||||||||    
T  3159963 taaagttgattacaacgtgtttaaatttttcgatattagatggataaataaaggccaaatactattgtaac-ttgttatagacctttttttaatgaaata 3159865  T
Q  514 aatttctcaacttagat 530  Q
    |||| ||||| ||||||    
T  3159864 aattgctcaagttagat 3159848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 18602813 - 18602880
Alignment:
Q  110 cctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacgcgttggtgtctgacac 177  Q
    ||||||||||||| ||| || ||| |||||| ||||| | ||||| ||||||| ||||||||||||||    
T  18602813 cctatgaagcacggacatctctaggactagctgtgtcacggtgtccgacacgctttggtgtctgacac 18602880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 461
Target Start/End: Complemental strand, 31772606 - 31772527
Alignment:
Q  382 agaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaa 461  Q
    |||||||| ||||||  ||||||||   |||||||||||||||| ||| ||||||||||| ||||  ||||||| |||||    
T  31772606 agaaatgttgatcaacaaggggttaccaacattaaagttgattacaacgtttttagcttttttgacggtagatggataaa 31772527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 538
Target Start/End: Complemental strand, 2796326 - 2796200
Alignment:
Q  414 taaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttaga---aatttttctaatgaa 510  Q
    |||||||||||| ||| | ||||  ||| | ||||||||||| ||||||||||| ||||||||||  || | ||||| ||||     ||||| |||||||    
T  2796326 taaagttgattacaacgtatttaaatttttcgatagtagatggataaataaaggccaaatactattgtaac-ttgttatagaccttttttttttaatgaa 2796228  T
Q  511 ataaatttctcaacttagatgcttatgt 538  Q
    ||||||| ||||| |||||||| |||||    
T  2796227 ataaattgctcaagttagatgcatatgt 2796200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 15131731 - 15131784
Alignment:
Q  108 ttcctatgaagcacgaacacctatagtactagccgtgtcgcagtgtctgacacg 161  Q
    ||||||||||||||| |||||| ||| ||||| |||||||| ||||| ||||||    
T  15131731 ttcctatgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacacg 15131784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 530
Target Start/End: Original strand, 2875441 - 2875524
Alignment:
Q  446 atagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagat 530  Q
    |||||||||| ||||||||||| ||||||||||  |||| ||||| || |  ||||| ||||||| |||||| ||||| ||||||    
T  2875441 atagtagatggataaataaaggccaaatactattgtatc-ttgttataaacctttttttaatgaactaaattgctcaagttagat 2875524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 550
Target Start/End: Complemental strand, 13097493 - 13097441
Alignment:
Q  498 tttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    ||||| |||||||||||||| ||  | |||||||| |||||||||||||||||    
T  13097493 tttttttaatgaaataaattgcttgagttagatgcatatgtatgtattttgat 13097441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 550
Target Start/End: Complemental strand, 28867337 - 28867285
Alignment:
Q  498 tttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    ||||| |||||||||||||| || || |||||||| ||| |||||||||||||    
T  28867337 tttttttaatgaaataaattacttaagttagatgcatatatatgtattttgat 28867285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 550
Target Start/End: Complemental strand, 28869900 - 28869848
Alignment:
Q  498 tttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    ||||| ||||||||||||||  | || |||||||| |||||||||||||||||    
T  28869900 tttttttaatgaaataaattatttaagttagatgcatatgtatgtattttgat 28869848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 375 - 550
Target Start/End: Complemental strand, 13050 - 12875
Alignment:
Q  375 tgtgttgagaaatgtagatcaattagg-ggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaat 473  Q
    |||||||||||| || ||||||||||| ||||||||| |||||||||||||| ||  ||||||||||| ||||||||||||||||||||||| |||||||    
T  13050 tgtgttgagaaacgttgatcaattaggaggttatagaaattaaagttgattacaatgtttttagcttttttgatagtagatgaataaataaatgtcaaat 12951  T
Q  474 actatgatatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
    |||| || ||| ||||||| ||| |||||   |||||||||||| ||||| ||| || ||||||| |||||||||||    
T  12950 actaggacatc-ttgttttcgaacttttttcgatgaaataaattgctcaagttaaattcttatgtttgtattttgat 12875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 344 - 502
Target Start/End: Original strand, 70030 - 70190
Alignment:
Q  344 ttctacatatcgcagatacaagagttacatgtgtgttgagaaatgtagatcaattag-gggttatagacattaaagttgattataacatttttagcttt- 441  Q
    ||||||| | || |||||||||| |||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||||   |||||||||||||     
T  70030 ttctacacaacgtagatacaagaattacatatgtgttgagaaatgttgatcaattagagggttatagaaattaaagttgatta---catttttagctttt 70126  T
Q  442 ----cttgatagtagatgaataaataaaggtcaaatactatgatatctttgttttagaaattttt 502  Q
        ||| ||| |||||||||||||||| |||||||||||||||||| ||||||||||| |||||    
T  70127 ttttctttatattagatgaataaataaatgtcaaatactatgatatc-ttgttttagaacttttt 70190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 380 - 550
Target Start/End: Complemental strand, 209355 - 209188
Alignment:
Q  380 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatg 479  Q
    |||||||||| ||||||  ||||||||| |||||||||||| |||| ||| ||||||  ||| | ||| ||||||| ||||||||||| |||||| | |     
T  209355 tgagaaatgttgatcaacgaggggttatcgacattaaagtttattacaacgtttttaaatttttcgattgtagatggataaataaaggccaaatattgtt 209256  T
Q  480 atatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
     ||| |||||| ||||| ||||| |||||||||||||| ||  | |||||||| |||||||||||||||||    
T  209255 gtat-tttgttatagaactttttttaatgaaataaattgct--agttagatgcatatgtatgtattttgat 209188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 550
Target Start/End: Original strand, 334 - 501
Alignment:
Q  380 tgagaaatgtagatcaattaggggttatagacattaaagttgattataacatttttagctttcttgatagtagatgaataaataaaggtcaaatactatg 479  Q
    |||||||||| ||||||  | ||||||| ||||| ||||||||||  ||| | |||   ||| | ||||| ||||| ||||||||||||||||||||||     
T  334 tgagaaatgttgatcaacaatgggttatggacatcaaagttgattccaacgtatttcaattt-tcgatagcagatggataaataaaggtcaaatactatt 432  T
Q  480 atatctttgttttagaaatttttctaatgaaataaatttctcaacttagatgcttatgtatgtattttgat 550  Q
     |||| ||||| ||||| ||||| ||||||||||| || ||||| |||||||| ||| |||||||||||||    
T  433 gtatc-ttgttatagaattttttttaatgaaataatttgctcaagttagatgcatat-tatgtattttgat 501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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