View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_high_11 (Length: 419)
Name: NF8186_high_11
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 4485217 - 4484925
Alignment:
| Q |
1 |
ttaaaggtgtctaagaataatatgagcccgtgtattgcagccgaagagatgattaatgtgcaaaaggtgcaagtgattatagggataagcacacatggcc |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4485217 |
ttaaaggtgtataagaataatatgagcccgtgtattgcagccgaagagatgattaatgtgcaaaaggtgcaagtgattatagggat--gcacacatggcc |
4485120 |
T |
|
| Q |
101 |
agaagcagctataatggaagatataggaaacaaagctcaagttcctatcatatcctttgcagcacctaccataaccccaccgttgatgaataatcgatgg |
200 |
Q |
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| T |
4485119 |
agaagcagctataatggaagatataggaagcaaagctcaagttcctatcatatcctttgcagcacctaccattaccccacctttgatgaataatcgatgg |
4485020 |
T |
|
| Q |
201 |
ccttttctggtgagactagctaacaatggtacgacatacataaaatgcattgcagaaatagtgcatgcttattgctggaagagagtagtagtaat |
295 |
Q |
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| T |
4485019 |
ccttttctagtgagactagctaacaatggtacgacatacataaaatgcattgcagaaatagtgcatgcttattgctggaagagagtagtagtaat |
4484925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 4489384 - 4488990
Alignment:
| Q |
1 |
ttaaaggtgtctaagaataatatgagcccgtgtattgcagccgaagagatgattaatgtgcaaaaggtgcaagtgattatagggataagcacacatggcc |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
4489384 |
ttaaaggtgtataagaataatatgagcccgtgtattgcagccgaagagatgattaatgtgcaaaaggtgcaagtgattatagggat--gcaaacatggca |
4489287 |
T |
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| Q |
101 |
agaagcagctataatggaagatataggaaacaaagctcaagttcctatcatatcctttgcagcacctaccataaccccaccgttgatgaataatcgatgg |
200 |
Q |
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|||||||||||| ||| || |||||| ||||||||||||||| |||||||||||| ||| |||||||| |||||||| |||||| | ||| ||| |
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| T |
4489286 |
agaagcagctatggtggctgaagtaggaagcaaagctcaagttccagtcatatcctttgtagctcctaccattaccccaccattgatggaagctcggtgg |
4489187 |
T |
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| Q |
201 |
ccttttctggtgagactagctaacaatggtacgacatacataaaatgcattgcagaaatagtgcatgcttattgctggaagagagtagtagtaatctaca |
300 |
Q |
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||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| |
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| T |
4489186 |
ccttttctggtgagactagctaacactggtacagcatatataaaatgcattgcagaaatagtgcaggcttatagctggaagaaagtagtagtaatctacg |
4489087 |
T |
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| Q |
301 |
aagatgatgggtatggtggagattatgggatgctaaccctgttacgtgaagcccttcaagatgtggattcaatgattgagcactgcttaatccttcc |
397 |
Q |
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| T |
4489086 |
aagataacgggtacggtggagattacgggatgctagctctgctagctgaggcacttcaggacgtggactcaatgatcgagcaccgcttagtccttcc |
4488990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 292 - 411
Target Start/End: Complemental strand, 4484127 - 4484008
Alignment:
| Q |
292 |
taatctacaaagatgatgggtatggtggagattatgggatgctaaccctgttacgtgaagcccttcaagatgtggattcaatgattgagcactgcttaat |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4484127 |
taatctacaaagatgatgggtatggtggagattatgggatgctaaccctgttaggtgaagcccttcaagatgtggattcaatgattgagcactgcttaat |
4484028 |
T |
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| Q |
392 |
ccttcccttgatttcttctc |
411 |
Q |
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|||||||||||||||||||| |
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| T |
4484027 |
ccttcccttgatttcttctc |
4484008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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