View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_high_13 (Length: 414)

Name: NF8186_high_13
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_high_13
NF8186_high_13
[»] chr2 (5 HSPs)
chr2 (14-406)||(24449574-24449963)
chr2 (15-234)||(7532741-7532960)
chr2 (240-399)||(7531447-7531603)
chr2 (113-234)||(19935286-19935407)
chr2 (287-341)||(19935455-19935509)
[»] chr5 (3 HSPs)
chr5 (113-234)||(5580519-5580640)
chr5 (287-341)||(5580417-5580471)
chr5 (204-255)||(21707067-21707118)
[»] scaffold0015 (2 HSPs)
scaffold0015 (279-335)||(80424-80480)
scaffold0015 (292-336)||(53642-53686)
[»] chr6 (2 HSPs)
chr6 (210-255)||(32095714-32095759)
chr6 (200-255)||(24176291-24176346)
[»] scaffold0068 (1 HSPs)
scaffold0068 (204-255)||(6792-6843)
[»] scaffold0006 (1 HSPs)
scaffold0006 (200-255)||(204607-204662)
[»] chr8 (2 HSPs)
chr8 (200-255)||(13524571-13524626)
chr8 (200-255)||(13614106-13614161)
[»] chr7 (1 HSPs)
chr7 (204-255)||(21503594-21503645)
[»] chr3 (1 HSPs)
chr3 (200-255)||(13501901-13501956)
[»] chr4 (1 HSPs)
chr4 (292-336)||(17779400-17779444)
[»] chr1 (1 HSPs)
chr1 (211-255)||(23265799-23265843)


Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 406
Target Start/End: Original strand, 24449574 - 24449963
Alignment:
Q  14 accttcaatatgaatttagactgacacaagcttctccagacatagtttggtttatgtcccaaggtaaattgtagaaaatcacacctagaaaaatacctag 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  24449574 accttcaatatgaatttagactgacacaagcttctccagacatagtttggtttatgtcccaaggtagattgtagaaaatcacacctaggaaaatacctag 24449673  T
Q  114 ccttataaatacgagcaataagagagtctggatttgacatagtatgccatccttgcttacccaacatagcaagattaaacaccagtaaacttttatagct 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24449674 ccttataaatacgagcaataagagagtctggatttgacataatatgccatccttgcttacccaacatagcaagattaaacaccggtaaacttttatagct 24449773  T
Q  214 cattcctccatcatttttatgcatggataatttatcccaagaaaaccaattaacaccttttattaattttgcataccagagtgaccccaccagaaagaat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    || | ||||| |||||||||||||||||||||    
T  24449774 cattcctccatcatttttatgcatggataatttatcccaagaaagccaattaacaccttttatt----tttcgtaccacagtgaccccaccagaaagaat 24449869  T
Q  314 taagaatttt-ttcaatttcatcatataagtcgtgggtaaagttaagacgctcataaaataagtgggagtagattgaagtaccgacttcttctc 406  Q
    |||||||||| |||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24449870 taagaatttttttcaatttcatcatataagttgtgggtaaagtttagacggtcataaaataagtgggagtagattgaagtaccgacttcttctc 24449963  T

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Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 7532960 - 7532741
Alignment:
Q  15 ccttcaatatgaatttagactgacacaagcttctccagacatagtttggtttatgtcccaaggtaaattgtagaaaatcacacctagaaaaatacctagc 114  Q
    ||||||||||||| ||||| | |||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||||||||||  |||||||||||    
T  7532960 ccttcaatatgaacttagaattacacaagcttctccagacataacttggtttgtgtcccaaggtagattgtagaaaatcacacctagggaaatacctagc 7532861  T
Q  115 cttataaatacgagcaataagagagtctggatttgacatagtatgccatccttgcttacccaacatagcaagattaaacaccagtaaacttttatagctc 214  Q
     || ||| ||||||||||||||||| |||| ||||||||  || |||||||||||||||||||  ||||| ||||||||||  | |||| |||| |||||    
T  7532860 tttgtaactacgagcaataagagagactgggtttgacattatacgccatccttgcttacccaatgtagcatgattaaacactggcaaacctttaaagctc 7532761  T
Q  215 attcctccatcatttttatg 234  Q
    ||||||||||||||||||||    
T  7532760 attcctccatcatttttatg 7532741  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 399
Target Start/End: Complemental strand, 7531603 - 7531447
Alignment:
Q  240 ataatttatcccaagaaaaccaattaacaccttttattaattttgcataccagagtgaccccaccagaaagaattaagaatttttt-caatttcatcata 338  Q
    |||||||||| ||||||| |||||||||||||||     ||||||  ||||||||||||||||| ||| ||||||||| ||||||| ||||||||||| |    
T  7531603 ataatttatctcaagaaagccaattaacaccttt-----attttgagtaccagagtgaccccactagatagaattaagcatttttttcaatttcatcaca 7531509  T
Q  339 taa-gtcgtgggtaaagttaagacgctcataaaataagtgggagtagattgaagtaccgact 399  Q
    ||| || ||||||| ||  |||| ||||||||||||||||||| |  |||||||||||||||    
T  7531508 taaagttgtgggtagaggaaagatgctcataaaataagtgggaatttattgaagtaccgact 7531447  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 19935286 - 19935407
Alignment:
Q  113 gccttataaatacgagcaataagagagtctggatttgacatagtatgccatccttgcttacccaacatagcaagattaaacaccagtaaacttttatagc 212  Q
    ||||||||||| |||||||||||||  || || || | |||| || ||||||||||||| || | ||| || | |||||||||  |||| |||||| | |    
T  19935286 gccttataaattcgagcaataagagtatccgggttagtcatattacgccatccttgctttccaagcattgccaaattaaacacgggtaagcttttaaaac 19935385  T
Q  213 tcattcctccatcatttttatg 234  Q
    ||||||||||||||||||||||    
T  19935386 tcattcctccatcatttttatg 19935407  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 19935455 - 19935509
Alignment:
Q  287 taccagagtgaccccaccagaaagaattaagaattttttcaatttcatcatataa 341  Q
    |||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  19935455 taccagagtgaccccaccagaatgaattaagcattttttcaatctcatcacataa 19935509  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 5580640 - 5580519
Alignment:
Q  113 gccttataaatacgagcaataagagagtctggatttgacatagtatgccatccttgcttacccaacatagcaagattaaacaccagtaaacttttatagc 212  Q
    ||||||||||| |||||||||||||  || || || | |||| || ||||||||||||| || | ||| || | |||||||||  |||| |||||| | |    
T  5580640 gccttataaattcgagcaataagagtatccgggttagtcataatacgccatccttgctttccaagcattgccaaattaaacacgggtaagcttttaaaac 5580541  T
Q  213 tcattcctccatcatttttatg 234  Q
    ||||||||||||||||||||||    
T  5580540 tcattcctccatcatttttatg 5580519  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 5580471 - 5580417
Alignment:
Q  287 taccagagtgaccccaccagaaagaattaagaattttttcaatttcatcatataa 341  Q
    ||||| |||||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  5580471 taccatagtgaccccaccagaatgaattaagcattttttcaatctcatcacataa 5580417  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 21707118 - 21707067
Alignment:
Q  204 ttttatagctcattcctccatcatttttatgcatggataatttatcccaaga 255  Q
    ||||| ||||||| |||||||| ||||||||||| |||||||| ||||||||    
T  21707118 ttttaaagctcatacctccatcttttttatgcatagataatttgtcccaaga 21707067  T

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Target: scaffold0015 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 80480 - 80424
Alignment:
Q  279 attttgcataccagagtgaccccaccagaaagaattaagaattttttcaatttcatc 335  Q
    |||| ||||||| || |||||||| |||||||||||||| |||||||||||||||||    
T  80480 atttggcatacccgaatgaccccatcagaaagaattaagcattttttcaatttcatc 80424  T

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Target: scaffold0015; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 53642 - 53686
Alignment:
Q  292 gagtgaccccaccagaaagaattaagaattttttcaatttcatca 336  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||    
T  53642 gagtgaccccaccagaaagaattcaacattttttcaatttcatca 53686  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 32095759 - 32095714
Alignment:
Q  210 agctcattcctccatcatttttatgcatggataatttatcccaaga 255  Q
    ||||||| |||||||| ||||||||||| |||||||||||||||||    
T  32095759 agctcatacctccatcgtttttatgcattgataatttatcccaaga 32095714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 24176346 - 24176291
Alignment:
Q  200 aaacttttatagctcattcctccatcatttttatgcatggataatttatcccaaga 255  Q
    ||||||||| ||||||| |||||||| || || ||||| |||||||||||||||||    
T  24176346 aaacttttaaagctcatccctccatctttcttgtgcatagataatttatcccaaga 24176291  T

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Target: scaffold0068 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 6792 - 6843
Alignment:
Q  204 ttttatagctcattcctccatcatttttatgcatggataatttatcccaaga 255  Q
    ||||| ||||||| |||||||| ||||||||||| |||||||| ||||||||    
T  6792 ttttaaagctcatacctccatcttttttatgcatagataatttgtcccaaga 6843  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 204607 - 204662
Alignment:
Q  200 aaacttttatagctcattcctccatcatttttatgcatggataatttatcccaaga 255  Q
    ||||||||| ||||||| |||||||| || || ||||| |||||||||||||||||    
T  204607 aaacttttaaagctcatccctccatctttcttgtgcatagataatttatcccaaga 204662  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 13524571 - 13524626
Alignment:
Q  200 aaacttttatagctcattcctccatcatttttatgcatggataatttatcccaaga 255  Q
    ||||||||| ||||||| |||| ||| || |||||||| |||||||||||||||||    
T  13524571 aaacttttaaagctcatccctctatctttcttatgcatagataatttatcccaaga 13524626  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 13614106 - 13614161
Alignment:
Q  200 aaacttttatagctcattcctccatcatttttatgcatggataatttatcccaaga 255  Q
    ||||||||| ||||||| |||| ||| || |||||||| |||||||||||||||||    
T  13614106 aaacttttaaagctcatccctctatctttcttatgcatagataatttatcccaaga 13614161  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 21503645 - 21503594
Alignment:
Q  204 ttttatagctcattcctccatcatttttatgcatggataatttatcccaaga 255  Q
    ||||| ||||||| |||||||| || |||||||| |||||||||||||||||    
T  21503645 ttttaaagctcatccctccatctttcttatgcatagataatttatcccaaga 21503594  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 13501956 - 13501901
Alignment:
Q  200 aaacttttatagctcattcctccatcatttttatgcatggataatttatcccaaga 255  Q
    ||||||||| ||||||| |||||||| || || ||||| |||||||||||||||||    
T  13501956 aaacttttaaagctcatccctccatctttcttgtgcatagataatttatcccaaga 13501901  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 17779400 - 17779444
Alignment:
Q  292 gagtgaccccaccagaaagaattaagaattttttcaatttcatca 336  Q
    |||||||||||||| |||||||| |  ||||||||||||||||||    
T  17779400 gagtgaccccaccaaaaagaatttaacattttttcaatttcatca 17779444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 23265799 - 23265843
Alignment:
Q  211 gctcattcctccatcatttttatgcatggataatttatcccaaga 255  Q
    |||||| ||||||||||||||||||||   |||||||||||||||    
T  23265799 gctcatacctccatcatttttatgcattactaatttatcccaaga 23265843  T

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