View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8186_high_14 (Length: 411)
Name: NF8186_high_14
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 197 - 402
Target Start/End: Original strand, 9267856 - 9268059
Alignment:
| Q |
197 |
gttagtcttcggaatgatatcaatgatgcacttcaacaacattataatattgagaaggtgattttccttttaatgcagcccttccatgcatatcaaagtg |
296 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9267856 |
gttagtctttggaatgatatcaatgatgcacttcatcaacattataatattga--aggtgattttccttttaatgcagcccttccatgcatatcaaagtg |
9267953 |
T |
|
| Q |
297 |
agcatttcacaattgaattgcggagtctatggaagagcataaatatgaaactttggccacattttgatgagacaagtaaccatacagaggagtgtgtaat |
396 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9267954 |
agcatttcacaattgaattgtggagtctatggaagagcataaatatgaaactttggccacattttgatgagacaagtaaccagacagaggagtgtgtaat |
9268053 |
T |
|
| Q |
397 |
tcatct |
402 |
Q |
| |
|
|||||| |
|
|
| T |
9268054 |
tcatct |
9268059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 9267606 - 9267788
Alignment:
| Q |
13 |
atgaaaaacattgcagatacctctcatttacggcgtctagggaagtggactagaatttggagactcaaggtctctcctaaagtgaagaatcttgtgtgac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9267606 |
atgaaaaacattgcagatacctctcatttacggcgtctagggcagtggactagaatgtggtgactcaaggtctctcctaaagtgaagaatcttgtgtgac |
9267705 |
T |
|
| Q |
113 |
gagtttgtaggggatgttttcatacaagagacaatctgagcatctgagtcgttccatgtctagtgagttgtgtgatgtgtaat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9267706 |
gagtttgtaggggatgttttcatacaagagacaatctgagcatctgagtcgttccatgtctagtgagttgtgtgatgtgtaat |
9267788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 29816115 - 29816060
Alignment:
| Q |
318 |
ggagtctatggaagagcataaatatgaaactttggccacattttgatgagacaagt |
373 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||| |||| | |||||||||||| |
|
|
| T |
29816115 |
ggagtatatggaagagcagaaatttgaaactttggcaacatgtcgatgagacaagt |
29816060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University