View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8186_high_20 (Length: 366)
Name: NF8186_high_20
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 38149638 - 38149967
Alignment:
| Q |
19 |
cctgtgccaaaaactgtgacagttttcacagtaacaaagagtctagaacaaggtggaaacaaacttctttatagatggcaacaagtagcaccaaatattg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38149638 |
cctgtgccaaaaactgtgacagttttcacagtaacaaagagtctagaacaaggtggaaacaaacttctttatagatggcaacaagtagcaccaaatattg |
38149737 |
T |
|
| Q |
119 |
atgaaaatctcttcatcagagtcttgattcagccaggcaatggtagtgttcctggtcaaagaactgtaaccacttcttaccaagctctatttcttggtgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38149738 |
atgaaaatctcttcatcagagtcttgattcagccaggcaatggtagtgttcctggtcaaagaactgtaaccacttcttaccaagctctatttcttggtgg |
38149837 |
T |
|
| Q |
219 |
agctaatagacttctccaagttatgaagcagagttttcctgaattgggtttaacaagaaaggattgtttggaaactagttggatcaaatcggttctttat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38149838 |
agctaatagacttctccaagttatgaagcagagttttcctgaattgggtttaacaagaaaggattgtttggaaactagttggatcaaatcggttctttat |
38149937 |
T |
|
| Q |
319 |
attgccggctatcccaatacaacacctcca |
348 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |
|
|
| T |
38149938 |
atcgccggctatcccaatacaacacctcca |
38149967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 38145845 - 38145952
Alignment:
| Q |
34 |
gtgacagttttcacagtaacaaagagtctagaacaaggtggaaacaaacttctttatagatggcaacaagtagcaccaaatattgatgaaaatctcttca |
133 |
Q |
| |
|
||||||||||| || || || || | |||||||||||||| | ||| ||||| ||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
38145845 |
gtgacagtttttactgtcactaaaactctagaacaaggtgctacaaaaattcttcatagatggcaagaagtagcaccttttattgatgaaaatctcttca |
38145944 |
T |
|
| Q |
134 |
tcagagtc |
141 |
Q |
| |
|
| |||||| |
|
|
| T |
38145945 |
ttagagtc |
38145952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 38146064 - 38146137
Alignment:
| Q |
250 |
agttttcctgaattgggtttaacaagaaaggattgtttggaaactagttggatcaaatcggttctttatattgc |
323 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||| |||||||||||||||||||| || ||||| ||||| |
|
|
| T |
38146064 |
agttttcctgaattgggtttgacaaggaaagattgtcaagaaactagttggatcaaatcagtgctttacattgc |
38146137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 11786771 - 11786674
Alignment:
| Q |
235 |
caagttatgaagcagagttttcctgaattgggtttaacaagaaaggattgtttggaaactagttggatcaaatcggttctttatattgccggctatcc |
332 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||| || | | | ||||| ||||||||| ||||||||||| ||| | |||||||| |||||||| |
|
|
| T |
11786771 |
caagttatgaaggaaagttttcctgaattaggtttgactaaacaagattgcacggaaactagctggatcaaatctgttatgtatattgcaggctatcc |
11786674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 11786916 - 11786869
Alignment:
| Q |
93 |
atggcaacaagtagcaccaaatattgatgaaaatctcttcatcagagt |
140 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
11786916 |
atggcaagaagtagcaccaactattgatgaaaatctctttatgagagt |
11786869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University