View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_high_23 (Length: 362)
Name: NF8186_high_23
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 49974530 - 49974853
Alignment:
| Q |
19 |
aagtagtaatgaatagttgcttctgcaatctgcatatatatacggataacactaagcaaccatataaagtagtcattagaggtcgattctttgcgagaaa |
118 |
Q |
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| T |
49974530 |
aagtagtaatgaatagttgcttctgcaatctgcatatatatacggataacactaagcaaccatataaagtagtcattagaggtcgattctttgcgagaaa |
49974629 |
T |
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| Q |
119 |
tacatctaagcatatatcaagtaatgacagagaatgaaataataatgaaattcaaatccgtttctctgatcaatgtata--ttttttgaaaaggactatg |
216 |
Q |
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| T |
49974630 |
tacatctcagcatatatcaagtaatgacagagaatgaaataataatgaaattcaaatccgtttctctgatcaatgtataatttttttgaaaaggactatg |
49974729 |
T |
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| Q |
217 |
tatatgtcatctatgagatataccaaatttcaaagnnnnnnnngcaacacatatgaggttgagactatctcatctcagcttatagattataaaaccctaa |
316 |
Q |
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| T |
49974730 |
tatatgtcatctatgagatataccaaatttcaaag-aaaaaaagcaacacatatgaggttgagact-----atctcagcttatagattataaaaccctaa |
49974823 |
T |
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| Q |
317 |
tgatagcaacgtatcgttggtgctataagt |
346 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
49974824 |
tgatagcaacgtatcgttggtgctataagt |
49974853 |
T |
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