View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_high_33 (Length: 299)

Name: NF8186_high_33
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_high_33
NF8186_high_33
[»] chr7 (3 HSPs)
chr7 (1-281)||(18934486-18934766)
chr7 (1-224)||(34726081-34726304)
chr7 (87-277)||(34716306-34716496)
[»] chr4 (8 HSPs)
chr4 (27-190)||(7887258-7887421)
chr4 (7-98)||(4134581-4134672)
chr4 (2-57)||(4344155-4344210)
chr4 (7-98)||(6533479-6533570)
chr4 (7-57)||(4125236-4125286)
chr4 (7-57)||(4352439-4352489)
chr4 (7-57)||(4321830-4321880)
chr4 (7-57)||(4334702-4334752)
[»] chr6 (4 HSPs)
chr6 (9-98)||(5103708-5103797)
chr6 (7-59)||(5424782-5424834)
chr6 (7-98)||(5342794-5342885)
chr6 (7-57)||(5382775-5382825)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 18934486 - 18934766
Alignment:
Q  1 gcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatttcctttaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934486 gcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatttcctttaaaa 18934585  T
Q  101 tgtacaccagctgactttcatcaagaatgtattgtggctgttgacttaaaatattccaatctggaacgagtgtggaggaagtcccaggtacaagtttagt 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934586 tgtacaccagctgactttcatcaagaatgtatcgtggctgttgacttaaaatattccaatctggaacgagtgtggaggaagtcccaggtacaagtttagt 18934685  T
Q  201 tttcttcttgatcttgtttcgatactaattaatttttctcttagaagtaataaacaggagttcacttcaatggttcactgt 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934686 tttcttcttgatcttgtttcgatactaattaatttttctcttagaagtaataaacaggagttcacttcaatggttcactgt 18934766  T

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Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 34726304 - 34726081
Alignment:
Q  1 gcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatttcctttaaaa 100  Q
    ||||||||| ||||| ||| |||| ||||||||| | ||| |||||||||||||||| | |||| ||  || |||||||||||||||||||||||||||     
T  34726304 gcttaaatttcttcagcttgctggcgtacaacttgaaggaaattacaaatatctttccagagatattcgatggctttgttggcatggatttcctttaaag 34726205  T
Q  101 tgtacaccagctgactttcatcaagaatgtattgtggctgttgacttaaaatattccaatctggaacgagtgtggaggaagtcccaggtacaagtttagt 200  Q
    | ||||||||  || ||||||||||||  | | || |||||||| |||||||||||| |||| |||| |||||||| |||||||||||||||||||| ||    
T  34726204 tatacaccagaagagtttcatcaagaacatttagttgctgttgatttaaaatattcccatcttgaacaagtgtggaagaagtcccaggtacaagttttgt 34726105  T
Q  201 tttcttcttgatcttgtttcgata 224  Q
    ||||||| |||||| |||||||||    
T  34726104 tttcttcatgatctagtttcgata 34726081  T

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Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 87 - 277
Target Start/End: Complemental strand, 34716496 - 34716306
Alignment:
Q  87 gatttcctttaaaatgtacaccagctgactttcatcaagaatgtattgtggctgttgacttaaaatattccaatctggaacgagtgtggaggaagtccca 186  Q
    |||| |||||||||||||||||||| |||||| ||||||||  | | || |||||||| |||||||||||||||||||||||||||||||  |||||| |    
T  34716496 gattccctttaaaatgtacaccagcagacttttatcaagaacatttagttgctgttgatttaaaatattccaatctggaacgagtgtggaaaaagtccta 34716397  T
Q  187 ggtacaagtttagttttcttcttgatcttgtttcgatactaattaatttttctcttagaagtaataaacaggagttcacttcaatggttca 277  Q
     |||||||||||||||||||  |||||| |||||||||||||||||| || || || ||| |||||||| |||||||| |||| |||||||    
T  34716396 agtacaagtttagttttctttatgatctcgtttcgatactaattaatcttccttttggaattaataaactggagttcagttcagtggttca 34716306  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 7887421 - 7887258
Alignment:
Q  27 tacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatttcctttaaaatgtacaccagctgactttcatcaaga 126  Q
    ||||||||||||||||||||||||||||||| | | ||||||  | |||| ||||||||||||| |||||||||| || ||| || ||||||||||||||    
T  7887421 tacaacttaatggagattacaaatatctttcaagacatcttaggtggcttagttggcatggattccctttaaaatatatacctgccgactttcatcaaga 7887322  T
Q  127 atgtattgtggctgttgacttaaaatattccaatctggaacgagtgtggaggaagtcccaggta 190  Q
       | | || ||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  7887321 tactctagttgctgttgtcttgaaatattccaatctggaacgagtgtggagaaagtctcaggta 7887258  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 4134672 - 4134581
Alignment:
Q  7 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatttcctttaa 98  Q
    ||||||||||| |||||||||||||||| |||||||||  ||||||||||| | | || | | || ||| |||||| ||| |||||||||||    
T  4134672 attgcttcaaccttctggtgtacaacttgatggagattttaaatatctttcaagaaatttgagatggctgtgttggaatgaatttcctttaa 4134581  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 4344155 - 4344210
Alignment:
Q  2 cttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 57  Q
    |||| |||||| ||||||||||||||||||||| |||||||||  |||||||||||    
T  4344155 cttagattgctgcaactttctggtgtacaacttgatggagattttaaatatctttc 4344210  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 6533570 - 6533479
Alignment:
Q  7 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatttcctttaa 98  Q
    ||||||||||||| ||||||| ||||| ||||||||||  |||| |||||| | |||||||| || ||| |  |||||||||||||| ||||    
T  6533570 attgcttcaacttgctggtgtgcaactgaatggagattttaaatgtctttcaagagatcttagatggctgtactggcatggatttccattaa 6533479  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 4125286 - 4125236
Alignment:
Q  7 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 57  Q
    |||||||||||||||||||| ||||||| |||||||||  |||||||||||    
T  4125286 attgcttcaactttctggtgcacaacttgatggagattttaaatatctttc 4125236  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 4352439 - 4352489
Alignment:
Q  7 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 57  Q
    |||||| ||||||||||||||||||||| |||||||||  |||||||||||    
T  4352439 attgctgcaactttctggtgtacaacttgatggagattttaaatatctttc 4352489  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 4321880 - 4321830
Alignment:
Q  7 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 57  Q
    |||||| ||||||||||||||||||||| |||||||||  |||||| ||||    
T  4321880 attgctgcaactttctggtgtacaacttgatggagattttaaatatatttc 4321830  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 4334702 - 4334752
Alignment:
Q  7 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 57  Q
    |||||||||||||||||| | ||||||| |||||||||  |||||||||||    
T  4334702 attgcttcaactttctggcgcacaacttgatggagattttaaatatctttc 4334752  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 5103797 - 5103708
Alignment:
Q  9 tgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatttcctttaa 98  Q
    |||||||||||||||| ||| ||||| |||||||||   |||||||||||| | |||| | |||||| | |||| |||||||| ||||||    
T  5103797 tgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaa 5103708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 5424782 - 5424834
Alignment:
Q  7 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttcga 59  Q
    ||||||||||||| |||| ||| |||||||||||||||  |||||||||||||    
T  5424782 attgcttcaacttgctggggtaaaacttaatggagattttaaatatctttcga 5424834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 5342794 - 5342885
Alignment:
Q  7 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatttcctttaa 98  Q
    |||||||||||||||||| ||||||||| |||||||||   | |||||||| | | | || | || ||| |||||| |||||||||||||||    
T  5342794 attgcttcaactttctggcgtacaacttgatggagattttgactatctttctagaaaactaagatggctatgttggaatggatttcctttaa 5342885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 5382775 - 5382825
Alignment:
Q  7 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 57  Q
    ||||||||||||| |||| ||||||||| ||||||||| ||| ||||||||    
T  5382775 attgcttcaacttgctggagtacaacttgatggagatttcaagtatctttc 5382825  T

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