View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8186_high_35 (Length: 288)
Name: NF8186_high_35
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_high_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 41754796 - 41755031
Alignment:
| Q |
1 |
aagttatggcgtatgggattgtgtacattattgtaggtgttactgtgtcactatgttcttattctcagcttctgttcaattcgttttttgaaagagtcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
41754796 |
aagttatggcgtatgggattgtgtacattattgtaggtgttactgtgtcactatgttcttattctcaacttctgttcaattcgtttttcgaa-gagtcaa |
41754894 |
T |
|
| Q |
101 |
tattgct--agtgttggaaggaaaatagtaatagaatgatataataagagcatcatgccgcatgcaaaaccaaacatagtgacacagttaactaccaaat |
198 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41754895 |
tattgttgtagtgttggaaggaaaatagtaatagaatgatataataagagcattatgccgcatgcaaaaccaaacatagtgacacagttaactaccaaat |
41754994 |
T |
|
| Q |
199 |
ttgtagttttgagatcctcggcacttaagtgccgatg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41754995 |
ttgtagttttgagatcctcggcacttaagtgccgatg |
41755031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 55121879 - 55122071
Alignment:
| Q |
1 |
aagttatggcgtatgggattgtgtacattattgtaggtgttactgtgtcactatgttcttattctcagcttctgttcaattcgttttttgaaagagtcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
55121879 |
aagttatggcgtatgggattgtgtacattattgtaggtgttactgtgtcactatggtcctattctcagcttctgttcaattcgttttttg-aagagtcaa |
55121977 |
T |
|
| Q |
101 |
tattgct--agtgttggaaggaaaatagtaatagaatgatataataagagcatcatgccgcatgcaaaaccaaacatagtgacacagttaacta |
192 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
55121978 |
tattgttggagtgttggaaggaaaatagtaatagaatgatataataacagcattatgccgcatgcaaaaccaaacatagtgacagagttaacta |
55122071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 11510376 - 11510335
Alignment:
| Q |
195 |
aaatttgtagttttgagatcctcggcacttaagtgccgatgg |
236 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11510376 |
aaatttgtagttttgagatcctaggcacttaagtgccgatgg |
11510335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 41754491 - 41754455
Alignment:
| Q |
197 |
atttgtagttttgagatcctcggcacttaagtgccga |
233 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41754491 |
atttgtagttttgagatcctcgccacttaagtgccga |
41754455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 55121726 - 55121693
Alignment:
| Q |
203 |
agttttgagatcctcggcacttaagtgccgatgg |
236 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
55121726 |
agttttgagatcctcgacacttaagtgccgatgg |
55121693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 46089306 - 46089072
Alignment:
| Q |
1 |
aagttatggcgtatgggattgtgtacattattgtaggtgttactgtgtcactatgttcttattctcagcttctgttcaattcgttttttgaaagagtcaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | ||| |
|
|
| T |
46089306 |
aagttatggcgtatgagattgtgtacattattgtaggtgttactgtgtcactatgttcttattctgagcttctgttcaattcgttttttgaagg-gccaa |
46089208 |
T |
|
| Q |
101 |
tattgct--agtgttggaaggaaaatagtaatagaatgatataataagagcatcatgccgcatgcaaaaccaaacatagtgacacagttaactaccaaat |
198 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46089207 |
tattgttgtagtgttggaaggaaaatagtaatagaatgatataataacagcattatgccgcatgcaaaaccaaacatagtcacacagttaactaccaaat |
46089108 |
T |
|
| Q |
199 |
ttgtagttttgagatcctcggcacttaagtgccgat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
46089107 |
ttgtagttttgagatcctcggcacttaagtgccgat |
46089072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 40047615 - 40047792
Alignment:
| Q |
1 |
aagttatggcgtatgggattgtgtacattattgtaggtgttactgtgtcactatgttcttattctcagcttctgttcaattcgttttttgaaagagtcaa |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||||||||||||| ||||| ||| |
|
|
| T |
40047615 |
aagttatggcgtatgtgattgtgtacattattgtaggttttactgtgttattatgttcttattctcagctcctgtacaattcgttttttg-aagagccaa |
40047713 |
T |
|
| Q |
101 |
tattg--ctagtgttggaaggaaaatagtaatagaatgatataataagagcatcatgccgcatgcaaaaccaaacatag |
177 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
40047714 |
tattgttgtagtgttggaaggaaaatagtaatagaatgatataataacagcattatgccgcatgcaaaaccaaacatag |
40047792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 25987269 - 25987232
Alignment:
| Q |
199 |
ttgtagttttgagatcctcggcacttaagtgccgatgg |
236 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25987269 |
ttgtagttctgagatcctcggcacttaagtgccgatgg |
25987232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 13862930 - 13862966
Alignment:
| Q |
199 |
ttgtagttttgagatcctcggcacttaagtgccgatg |
235 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
13862930 |
ttgtagttttaagatcctcggcaattaagtgccgatg |
13862966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University