View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_high_39 (Length: 282)
Name: NF8186_high_39
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 2998707 - 2998968
Alignment:
| Q |
1 |
ctaagacgatttcgataaagacacgtcgacatccttgataatttgaagnnnnnnnnnntatataatttaatataatcgtattatatgtatcagtttcaga |
100 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
2998707 |
ctaagacgattccgatatagacacgtcgacatccttgataatttgaagaaaaaaaata-atataatttaatataatcgtatcatatgtatcagtttcaga |
2998805 |
T |
|
| Q |
101 |
catgatacatgtgtcagttttgaacatgatacgtgttcggcagtgaaacacgtctaatctaaatatgtgtgctacatagctggcatgtgatgattcactt |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2998806 |
catgatacgtgtgtcagttttgaacatgatacgtgttcggcagtaaaacatgtctaatctaaatatgtgtgctacatagctggcatgtgatgattcactt |
2998905 |
T |
|
| Q |
201 |
tggttgtctgtctgtcttgtcttgaacctgaagttcttatccaattttcaggactggttggct |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2998906 |
tggttgtctgtctgtcttgtcttgaacctgaagttcttatccaattttcaggactggttggct |
2998968 |
T |
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