View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8186_high_43 (Length: 272)
Name: NF8186_high_43
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_high_43 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0182 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 28377 - 28122
Alignment:
| Q |
1 |
aatcgttgaaaaagaagcaatatttgtcactgatgaagttgtggctgcatcaacatcaatggtataaaagtacatattatgtaggtgactttatagattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28377 |
aatcgttgaaaaagaagcaatatttgtcactgatgaagttgtggctgcatcaacatcaatgatataaaagttcatattatgtaggtgactttatagattt |
28278 |
T |
|
| Q |
101 |
catattaagtggctgcactttgagtaccctgttaattatctcccattttctgctcatttgtcaggcaaaacagtagagttcaagaagttgaagaatcttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28277 |
catattaagtggctgcactttgagtaccctgttaattatctcccattttctgctcatttgtcaggcaaaacagtagagttcaaggagttgaagaatcttt |
28178 |
T |
|
| Q |
201 |
aagatatttattttaaatttttagttttactcaacagtactctcctaagtttatat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28177 |
aagatatttattttaaatttttagttttactcaacaatactctcctaagtttatat |
28122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 26396091 - 26395836
Alignment:
| Q |
1 |
aatcgttgaaaaagaagcaatatttgtcactgatgaagttgtggctgcatcaacatcaatggtataaaagtacatattatgtaggtgactttatagattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26396091 |
aatcgttgaaaaagaagcaatatttgtcactgatgaagttgtcgctgcatcaatatcaatggtataaaagttcatattatgtaggtgactttatagattt |
26395992 |
T |
|
| Q |
101 |
catattaagtggctgcactttgagtaccctgttaattatctcccattttctgctcatttgtcaggcaaaacagtagagttcaagaagttgaagaatcttt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
26395991 |
catattaagtggctgcacattgagtaccctgttaattatctcccattttctgttcatctgtcaggcaaaacaatagagttcaaggagttgaagaatcttt |
26395892 |
T |
|
| Q |
201 |
aagatatttattttaaatttttagttttactcaacagtactctcctaagtttatat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26395891 |
aagatatttattttaaatttttagttttactcaacagtactctcctaagtttatat |
26395836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 275487 - 275446
Alignment:
| Q |
1 |
aatcgttgaaaaagaagcaatatttgtcactgatgaagttgt |
42 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
275487 |
aatcgttgaaaaagaagcaatatttgtcgctgatgaagttgt |
275446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University