View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_high_50 (Length: 252)
Name: NF8186_high_50
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_high_50 |
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| [»] scaffold0071 (1 HSPs) |
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| [»] scaffold0443 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 20343559 - 20343433
Alignment:
| Q |
12 |
atggacatcagtagacgtacaaaaatattaaaattaatattaaccgaataaaatagcaaagtacaagctgatgagtacaaattacataatcctgtctgaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20343559 |
atggacatcagtagacgtacaaaaatattaaaattaatattaaccgaataaaatagcaaagtacaagctgatgagtacaaattacataatcctgtctgaa |
20343460 |
T |
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| Q |
112 |
gtaaacatgcactgactaacgagtaca |
138 |
Q |
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| T |
20343459 |
gtaaacatgcactgactaacgagtaca |
20343433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 20495751 - 20495819
Alignment:
| Q |
155 |
cgagcactttacccctttgaatacgcgcccagaaagaatcctcaaggaagttctcgagtcaaaaatcat |
223 |
Q |
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| T |
20495751 |
cgagcacttcactcctctgaatactcgccccgaaagaatcctcaaagaagtgcttgaataaaaaatcat |
20495819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 21808707 - 21808794
Alignment:
| Q |
155 |
cgagcactttacccctttgaatacgcgcccagaaagaatcctcaaggaagttctcgagtcaaaaatcattccgccggcacccttaagt |
242 |
Q |
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| T |
21808707 |
cgagcactttacccctttgaatacgcgccccgaaagaatcctcaaggaagttctcgaatcgaaaatcattccgccagcaccattaagt |
21808794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 21815077 - 21815164
Alignment:
| Q |
155 |
cgagcactttacccctttgaatacgcgcccagaaagaatcctcaaggaagttctcgagtcaaaaatcattccgccggcacccttaagt |
242 |
Q |
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| T |
21815077 |
cgagcactttacccctttgaatacgcgccccgaaagaatcctcaaggaagttctcgaatcgaaaatcattccgccagcaccattaagt |
21815164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 29602742 - 29602668
Alignment:
| Q |
155 |
cgagcactttacccctttgaatacgcgcccagaaagaatcctcaaggaagttctcgagtcaaaaatcattccgcc |
229 |
Q |
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| T |
29602742 |
cgagcactttacccctttgaacacgcgccccgaaagaatcctcaaagaagttctcgagtcaaaaatcattccgcc |
29602668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 17659663 - 17659616
Alignment:
| Q |
78 |
gctgatgagtacaaattacataatcctgtctgaagtaaacatgcactga |
126 |
Q |
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| T |
17659663 |
gctgatgagtacaaagtacataatgctgtctgaa-taatcatgcactga |
17659616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 15931239 - 15931165
Alignment:
| Q |
155 |
cgagcactttacccctttgaatacgcgcccagaaagaatcctcaaggaagttctcgagtcaaaaatcattccgcc |
229 |
Q |
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| T |
15931239 |
cgagcactttacccctttgaatacgcgccccgaaagaatacttaaggaagtactcgaatcgaaaatcatcccgcc |
15931165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 23531467 - 23531399
Alignment:
| Q |
155 |
cgagcactttacccctttgaatacgcgcccagaaagaatcctcaaggaagttctcgagtcaaaaatcat |
223 |
Q |
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| T |
23531467 |
cgagcacttcactcctttgaatactcgtcccgaaaggatcctcaaagaagttctcgaatcgaaaatcat |
23531399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 15833938 - 15833871
Alignment:
| Q |
162 |
tttacccctttgaatacgcgcccagaaagaatcctcaaggaagttctcgagtcaaaaatcattccgcc |
229 |
Q |
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||||||||||| ||||| ||||| | |||||||||||||||||| | ||||| |||||||| ||||| |
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| T |
15833938 |
tttacccctttaaatactcgccctaagagaatcctcaaggaagtttttgagtccaaaatcatcccgcc |
15833871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 12537433 - 12537359
Alignment:
| Q |
155 |
cgagcactttacccctttgaatacgcgcccagaaagaatcctcaaggaagttctcgagtcaaaaatcattccgcc |
229 |
Q |
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||||| |||||||||||| ||||| | ||| || | |||||||||||||||| | ||||| |||||||| ||||| |
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| T |
12537433 |
cgagctctttacccctttaaatactcaccctgagaaaatcctcaaggaagtttttgagtccaaaatcatcccgcc |
12537359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 43314 - 43254
Alignment:
| Q |
169 |
ctttgaatacgcgcccagaaagaatcctcaaggaagttctcgagtcaaaaatcattccgcc |
229 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||| || |||||||| ||||| |
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| T |
43314 |
ctttgaatacgcgccctgaaagaatcctcaaggaagtactcgaatcgaaaatcatcccgcc |
43254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 15418924 - 15418984
Alignment:
| Q |
169 |
ctttgaatacgcgcccagaaagaatcctcaaggaagttctcgagtcaaaaatcattccgcc |
229 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||| || |||||||| ||||| |
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| T |
15418924 |
ctttgaatacgcgccctgaaagaatcctcaaggaagtactcgaatcgaaaatcatcccgcc |
15418984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 554375 - 554301
Alignment:
| Q |
155 |
cgagcactttacccctttgaatacgcgcccagaaagaatcctcaaggaagttctcgagtcaaaaatcattccgcc |
229 |
Q |
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|
|||||||||||||||||| || || ||||| || | |||||||||||||||| ||||||| |||||||| ||||| |
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| T |
554375 |
cgagcactttacccctttaaacactcgccctgagaaaatcctcaaggaagttttcgagtccaaaatcatcccgcc |
554301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0443 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0443
Description:
Target: scaffold0443; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 5577 - 5538
Alignment:
| Q |
155 |
cgagcactttacccctttgaatacgcgcccagaaagaatc |
194 |
Q |
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||||||||||||||||||||| |||||||| ||||||||| |
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| T |
5577 |
cgagcactttacccctttgaaaacgcgccctgaaagaatc |
5538 |
T |
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