View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_high_53 (Length: 245)

Name: NF8186_high_53
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_high_53
NF8186_high_53
[»] chr7 (2 HSPs)
chr7 (162-219)||(18512833-18512890)
chr7 (7-84)||(18512673-18512747)
[»] chr2 (1 HSPs)
chr2 (161-224)||(14516756-14516819)
[»] chr5 (1 HSPs)
chr5 (178-224)||(32124547-32124593)


Alignment Details
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 18512833 - 18512890
Alignment:
Q  162 tattccttcccaaaagcagtgttgttaagtggcagtcatggcaccgccatggaagaat 219  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  18512833 tattccttcccaaaagcagtgttgttaagtggcggtcatggcaccgccatggcagaat 18512890  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 18512673 - 18512747
Alignment:
Q  7 ttggtgttgccttttcatttggcaatgacttcactatttcataaacgagactcttctgatctgcttcagatagagttt 84  Q
    |||||||||||||||||||||||||||||| |||   ||| ||||  | ||| |||||| |||||||||| |||||||    
T  18512673 ttggtgttgccttttcatttggcaatgactacac---ttcttaaatcatactattctgagctgcttcagaaagagttt 18512747  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 14516819 - 14516756
Alignment:
Q  161 atattccttcccaaaagcagtgttgttaagtggcagtcatggcaccgccatggaagaatggcat 224  Q
    ||||||||  |||||||||||||||||||||||| |||||||  ||||||||| ||||||||||    
T  14516819 atattcctatccaaaagcagtgttgttaagtggcggtcatggtgccgccatggcagaatggcat 14516756  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 32124547 - 32124593
Alignment:
Q  178 cagtgttgttaagtggcagtcatggcaccgccatggaagaatggcat 224  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||||    
T  32124547 cagtgttgttaaatggctatcatggcaccgccatggaagaatggcat 32124593  T

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