View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_high_55 (Length: 243)

Name: NF8186_high_55
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_high_55
NF8186_high_55
[»] chr8 (5 HSPs)
chr8 (1-224)||(19975717-19975940)
chr8 (1-224)||(21016893-21017116)
chr8 (1-225)||(27860475-27860698)
chr8 (136-188)||(13219322-13219374)
chr8 (136-176)||(15235977-15236017)
[»] chr4 (2 HSPs)
chr4 (9-224)||(5073957-5074172)
chr4 (2-100)||(10177168-10177265)
[»] scaffold0417 (1 HSPs)
scaffold0417 (2-224)||(4511-4733)
[»] chr5 (12 HSPs)
chr5 (1-98)||(38232639-38232736)
chr5 (144-224)||(38232533-38232613)
chr5 (110-224)||(25188229-25188343)
chr5 (135-224)||(25239972-25240061)
chr5 (135-224)||(25304125-25304214)
chr5 (134-222)||(25236402-25236490)
chr5 (134-222)||(25300562-25300650)
chr5 (1-73)||(25188146-25188218)
chr5 (1-73)||(25232102-25232174)
chr5 (1-73)||(25296260-25296332)
chr5 (110-224)||(25232185-25232298)
chr5 (110-224)||(25296343-25296456)
[»] chr3 (2 HSPs)
chr3 (54-224)||(8224452-8224621)
chr3 (1-58)||(8225945-8226002)
[»] chr1 (1 HSPs)
chr1 (18-100)||(34516520-34516602)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-50)||(98481-98530)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 19975717 - 19975940
Alignment:
Q  1 ccaatacttttacagtgagtgcaaaagtcaggcagcccctcgtattcaatttccaccggaaatgcataaccttcccgttccaccataacttcataaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  19975717 ccaatacttttacagtgagtgcaaaagtcaggcagcccctcatattcaattgccaccggaaatgcataaccttcccgttccaccataacttcttaaaaaa 19975816  T
Q  101 ggttctcaaaaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccc 200  Q
    |||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  19975817 ggttctcggaaaggtctaagtccatcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaatggagttctgatagcccc 19975916  T
Q  201 tgctatttcatacaaggttctctc 224  Q
    ||||||||||||||||||||||||    
T  19975917 tgctatttcatacaaggttctctc 19975940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 21017116 - 21016893
Alignment:
Q  1 ccaatacttttacagtgagtgcaaaagtcaggcagcccctcgtattcaatttccaccggaaatgcataaccttcccgttccaccataacttcataaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  21017116 ccaatacttttacagtgagtgcaaaagtcaggcagcccctcatattcaattgccaccggaaatgcataaccttcccgttccaccataacttcttaaaaaa 21017017  T
Q  101 ggttctcaaaaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccc 200  Q
    |||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  21017016 ggttctcggaaaggtctaagtccatcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaatggagttctgatagcccc 21016917  T
Q  201 tgctatttcatacaaggttctctc 224  Q
    ||||||||||||||||||||||||    
T  21016916 tgctatttcatacaaggttctctc 21016893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 27860475 - 27860698
Alignment:
Q  1 ccaatacttttacagtgagtgcaaaagtcaggcagcccctcgtattcaatttccaccggaaatgcataaccttcccgttccaccataacttcataaaaaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||  | ||||||||||||||  |||||||||||||||||| |||||    
T  27860475 ccaatacttttacagtgagtgcaaaagtcaggcaacccctcgtattcaatttccactaggaatgcataaccttcatgttccaccataacttcat-aaaaa 27860573  T
Q  101 ggttctcaaaaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccc 200  Q
     ||||||| |||||||||| |||  |||||| ||||| |||||||||| |||  |||| ||||||||||||||||||| ||||||||||| |||||||||    
T  27860574 tgttctcagaaaggtctaaatccaccaaaaccttggcttaatgaccaatcaacatgtttttagtaacattatcaattatcaacggagttctgatagcccc 27860673  T
Q  201 tgctatttcatacaaggttctctct 225  Q
      |||||||||||||||||||||||    
T  27860674 cactatttcatacaaggttctctct 27860698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 13219374 - 13219322
Alignment:
Q  136 gcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagt 188  Q
    ||||||||||||||||| | |||||||||||||| |||||| | |||||||||    
T  13219374 gcataatgaccaaacaaacggttcttagtaacatgatcaatgagcaacggagt 13219322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 15235977 - 15236017
Alignment:
Q  136 gcataatgaccaaacaatctgttcttagtaacattatcaat 176  Q
    |||||||||||||||||||||||||| || ||||| |||||    
T  15235977 gcataatgaccaaacaatctgttcttcgtcacattgtcaat 15236017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 5074172 - 5073957
Alignment:
Q  9 tttacagtgagtgcaaaagtcaggcagcccctcgtattcaatttccaccggaaatgcataaccttcccgttccaccataacttcataaaaaaggttctca 108  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||   |    
T  5074172 tttacagtgagtgcaaaagtcaggcaacccatcgtattcaatttccaccgaaaatgcataaccttcctgttccaccataacttcataaaaaatgtttcta 5074073  T
Q  109 aaaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctattt 208  Q
     ||| |||||||||   |||||| ||||||||||||||||||||  |||||||||||| ||||||||||||||||||||| | ||||||||| |||||||    
T  5074072 caaacgtctaagtctaacaaaaccttggcataatgaccaaacaacatgttcttagtaagattatcaattaacaacggagtcccgatagcccccgctattt 5073973  T
Q  209 catacaaggttctctc 224  Q
    ||||||||||||||||    
T  5073972 catacaaggttctctc 5073957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 10177265 - 10177168
Alignment:
Q  2 caatacttttacagtgagtgcaaaagtcaggcagcccctcgtattcaatttccaccggaaatgcataaccttcccgttccaccataacttcataaaaaa 100  Q
    |||| |||||||| ||||||||||| ||  ||||||| || |||||||| || || || |||||| |||||| |  |||||||||||||||||||||||    
T  10177265 caatgcttttacaatgagtgcaaaattccagcagccc-tcatattcaatctcaacggggaatgcaaaacctttctattccaccataacttcataaaaaa 10177168  T

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Target: scaffold0417 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 4733 - 4511
Alignment:
Q  2 caatacttttacagtgagtgcaaaagtcaggcagcccctcgtattcaatttccaccggaaatgcataaccttcccgttccaccataacttcataaaaaag 101  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||   || ||| ||||||||||||||||||||||| ||||||||||||||||||||     
T  4733 caatacttttacagtgagtgcaaaactcaggcagcccctcctatttcgttgccatcggaaatgcataaccttcccgttgcaccataacttcataaaaaat 4634  T
Q  102 gttctcaaaaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccct 201  Q
    |||| |  ||||||||||||||  ||||||| |  ||||||||||||||||| ||||||||||||||||||||||||  |||||||| | ||||| ||      
T  4633 gttcccggaaaggtctaagtccaccaaaactctaacataatgaccaaacaatttgttcttagtaacattatcaattagaaacggagtcccgatagaccac 4534  T
Q  202 gctatttcatacaaggttctctc 224  Q
     |||||| |||||||||||||||    
T  4533 tctatttaatacaaggttctctc 4511  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 38232736 - 38232639
Alignment:
Q  1 ccaatacttttacagtgagtgcaaaagtcaggcagcccctcgtattcaatttccaccggaaatgcataaccttcccgttccaccataacttcataaaa 98  Q
    ||||||||||| || || |||||||||||||| | ||||| | ||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||    
T  38232736 ccaatacttttgcaatgcgtgcaaaagtcaggtaaccccttgcattcaatctccaccggaaatgcataaccttccctttccaccataatttcataaaa 38232639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 38232613 - 38232533
Alignment:
Q  144 accaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctc 224  Q
    ||||||||| |||||||| ||| |||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||    
T  38232613 accaaacaacctgttcttcgtagcattatcaattagcaaaggagttccgatagcccctgctatttcatacaaggttctctc 38232533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 25188229 - 25188343
Alignment:
Q  110 aaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttc 209  Q
    ||||||||||||||   || || |||||||| ||||||||||| |||||||||||||||||||| | ||||||||| || | |||||| | |||||||||    
T  25188229 aaaggtctaagtccacaaacaccttggcatagtgaccaaacaacctgttcttagtaacattatcgactaacaacggtgtcccgatagctcttgctatttc 25188328  T
Q  210 atacaaggttctctc 224  Q
    |||||| ||||||||    
T  25188329 atacaatgttctctc 25188343  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 25239972 - 25240061
Alignment:
Q  135 ggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctc 224  Q
    |||||| ||||||||||| |||||||| ||||||||||| ||||||||||| || | |||||||| ||||||||||||||| ||||||||    
T  25239972 ggcatagtgaccaaacaacctgttcttggtaacattatcgattaacaacggtgtcccgatagcccatgctatttcatacaaagttctctc 25240061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 25304125 - 25304214
Alignment:
Q  135 ggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctc 224  Q
    |||||| ||||||||||| |||||||| ||||||||||| ||||||||||| || | |||||||| ||||||||||||||| ||||||||    
T  25304125 ggcatagtgaccaaacaacctgttcttggtaacattatcgattaacaacggtgtcccgatagcccatgctatttcatacaaagttctctc 25304214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 25236402 - 25236490
Alignment:
Q  134 tggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctc 222  Q
    ||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| || | |||||||| ||||||||||||||| ||||||    
T  25236402 tggcatagtgaccaaacaacctgttcttggtaacattatcgattaacaacggtgtcccgatagcccatgctatttcatacaaagttctc 25236490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 25300562 - 25300650
Alignment:
Q  134 tggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctc 222  Q
    ||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| || | |||||||| ||||||||||||||| ||||||    
T  25300562 tggcatagtgaccaaacaacctgttcttggtaacattatcgattaacaacggtgtcccgatagcccatgctatttcatacaaagttctc 25300650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25188146 - 25188218
Alignment:
Q  1 ccaatacttttacagtgagtgcaaaagtcaggcagcccctcgtattcaatttccaccggaaatgcataacctt 73  Q
    |||||||||||||| ||| ||||||| |||||||| |||||||||||||||||  | ||||||||||||||||    
T  25188146 ccaatacttttacaatgaatgcaaaactcaggcagtccctcgtattcaatttctgctggaaatgcataacctt 25188218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25232102 - 25232174
Alignment:
Q  1 ccaatacttttacagtgagtgcaaaagtcaggcagcccctcgtattcaatttccaccggaaatgcataacctt 73  Q
    |||||||||||||| ||| ||||||| |||||||| |||||||||||||||||  | ||||||||||||||||    
T  25232102 ccaatacttttacaatgaatgcaaaactcaggcagtccctcgtattcaatttctgctggaaatgcataacctt 25232174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25296260 - 25296332
Alignment:
Q  1 ccaatacttttacagtgagtgcaaaagtcaggcagcccctcgtattcaatttccaccggaaatgcataacctt 73  Q
    |||||||||||||| ||| ||||||| |||||||| |||||||||||||||||  | ||||||||||||||||    
T  25296260 ccaatacttttacaatgaatgcaaaactcaggcagtccctcgtattcaatttctgctggaaatgcataacctt 25296332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 25232185 - 25232298
Alignment:
Q  110 aaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttc 209  Q
    ||||||||||||||   || || |||||||| ||||||||||| ||||||||||||||| |||| | ||| ||||| || | |||||| | |||||||||    
T  25232185 aaaggtctaagtccacaaacaccttggcatagtgaccaaacaacctgttcttagtaaca-tatcgactaaaaacggtgtcccgatagctcttgctatttc 25232283  T
Q  210 atacaaggttctctc 224  Q
    |||||| ||||||||    
T  25232284 atacaatgttctctc 25232298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 25296343 - 25296456
Alignment:
Q  110 aaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttc 209  Q
    ||||||||||||||   || || |||||||| ||||||||||| ||||||||||||||| |||| | ||| ||||| || | |||||| | |||||||||    
T  25296343 aaaggtctaagtccacaaacaccttggcatagtgaccaaacaacctgttcttagtaaca-tatcgactaaaaacggtgtcccgatagctcttgctatttc 25296441  T
Q  210 atacaaggttctctc 224  Q
    |||||| ||||||||    
T  25296442 atacaatgttctctc 25296456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 8224621 - 8224452
Alignment:
Q  54 caccggaaatgcataaccttcccgttccaccataacttcataaaaaaggttctcaaaaaggtctaagtccttcaaaactttggcataatgaccaaacaat 153  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||   ||| ||||| | |  ||| ||  ||||||| |||| |||||||    
T  8224621 caccgaaaatgcataaccttcccattccaccataacttcataaaaaatgttttcggtaagttctaaattcaccaagaccctggcatagtgactaaacaat 8224522  T
Q  154 ctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctc 224  Q
     |||| ||||||||||||||||||||||| ||  ||| ||||| ||  ||||||||||||||  |||||||    
T  8224521 atgtttttagtaacattatcaattaacaatggtattccgatag-cctagctatttcatacaattttctctc 8224452  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 8226002 - 8225945
Alignment:
Q  1 ccaatacttttacagtgagtgcaaaagtcaggcagcccctcgtattcaatttccaccg 58  Q
    |||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||||    
T  8226002 ccaatagttttacagtgagtgcaaaattcaggcagtcccttgtattcaatttccaccg 8225945  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 34516602 - 34516520
Alignment:
Q  18 agtgcaaaagtcaggcagcccctcgtattcaatttccaccggaaatgcataaccttcccgttccaccataacttcataaaaaa 100  Q
    ||||||||| |  ||||||||||| |||||||| |||||||| |||||  |||||||  |||||||||| |||||||||||||    
T  34516602 agtgcaaaaatacggcagcccctcatattcaatctccaccgggaatgcgaaaccttcgtgttccaccatcacttcataaaaaa 34516520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 98530 - 98481
Alignment:
Q  1 ccaatacttttacagtgagtgcaaaagtcaggcagcccctcgtattcaat 50  Q
    |||||||| ||||||||||||||||| || ||||| ||||| ||||||||    
T  98530 ccaatactcttacagtgagtgcaaaattccggcagaccctcatattcaat 98481  T

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