View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_high_64 (Length: 238)

Name: NF8186_high_64
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_high_64
NF8186_high_64
[»] chr6 (10 HSPs)
chr6 (52-235)||(4849419-4849619)
chr6 (142-237)||(15873133-15873229)
chr6 (141-221)||(21058200-21058280)
chr6 (140-237)||(15682783-15682884)
chr6 (164-237)||(21058283-21058357)
chr6 (52-102)||(7438600-7438650)
chr6 (52-106)||(15873278-15873332)
chr6 (52-106)||(21058102-21058156)
chr6 (141-179)||(7438701-7438739)
chr6 (52-104)||(15682671-15682730)
[»] chr7 (2 HSPs)
chr7 (52-237)||(12976604-12976806)
chr7 (52-237)||(18293368-18293570)
[»] chr5 (3 HSPs)
chr5 (140-237)||(26447206-26447303)
chr5 (140-237)||(23543424-23543521)
chr5 (52-102)||(23543324-23543375)
[»] chr8 (7 HSPs)
chr8 (140-237)||(17885262-17885360)
chr8 (52-237)||(25091661-25091872)
chr8 (141-221)||(4931470-4931548)
chr8 (140-237)||(8361584-8361683)
chr8 (164-237)||(4931551-4931625)
chr8 (52-103)||(4931360-4931411)
chr8 (52-102)||(8361480-8361532)
[»] chr2 (2 HSPs)
chr2 (52-237)||(27203604-27203812)
chr2 (52-237)||(27858751-27858959)
[»] scaffold0229 (1 HSPs)
scaffold0229 (140-237)||(25187-25284)
[»] chr1 (2 HSPs)
chr1 (140-237)||(1365469-1365565)
chr1 (52-237)||(42026092-42026296)
[»] chr4 (4 HSPs)
chr4 (52-237)||(14249473-14249677)
chr4 (141-221)||(13915496-13915574)
chr4 (164-237)||(13915419-13915493)
chr4 (52-103)||(13915627-13915678)
[»] chr3 (6 HSPs)
chr3 (140-237)||(38357442-38357538)
chr3 (164-237)||(35684027-35684101)
chr3 (141-221)||(35684104-35684182)
chr3 (179-237)||(20776697-20776755)
chr3 (52-140)||(38357330-38357420)
chr3 (52-103)||(35684259-35684310)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 52 - 235
Target Start/End: Complemental strand, 4849619 - 4849419
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgtcnnnnnnnnn-ctttgttctttggagcgcctatgt---------- 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||              
T  4849619 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgtcttttttttttctttgttctttggagcgcctatgtctatgtgcat 4849520  T
Q  141 ------gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatag 234  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4849519 gcacaggacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgtgatagatag 4849420  T
Q  235 t 235  Q
    |    
T  4849419 t 4849419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 15873229 - 15873133
Alignment:
Q  142 acaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgatagatagttg 237  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||    
T  15873229 acaattttgtagtccattttttaagccttttctgttgtgtttttgttgatggattattttataatatgcttagttaaaaaaatgtgatagatagttg 15873133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 21058200 - 21058280
Alignment:
Q  141 gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaa 221  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||||||  |||||||||||||||||||||||||||    
T  21058200 gacaattttgtagtcccttttttaagccttttttattgtgtttttgttgatgagttattttataatatgcttagttaaaaa 21058280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 15682783 - 15682884
Alignment:
Q  140 tgacaattttgtagtccctttttcaagccttttctgt---tgtgtttttgttgatggcttattttataatatgcttagtt-aaaaaatgcgatagatagt 235  Q
    |||||||||||||||||||||||||||| |||| | |   ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||    
T  15682783 tgacaattttgtagtccctttttcaagctttttttttgtgtgtgtttttgttgatgagttattttataatatgcttagttaaaaaaatgcgatagatagt 15682882  T
Q  236 tg 237  Q
    ||    
T  15682883 tg 15682884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 21058283 - 21058357
Alignment:
Q  164 aagccttttctgttgtgtttttgttgatggcttattttataatatgcttagtt-aaaaaatgcgatagatagttg 237  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| ||||||||||||    
T  21058283 aagccttttctgttgtgtttttgttgattgattattttataatatgcttagttaaaaaaatgtgatagatagttg 21058357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 7438600 - 7438650
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatat 102  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  7438600 atattatcagctatatgttctgcttcattttttatactatctgctatatat 7438650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 15873332 - 15873278
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgt 106  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  15873332 atattatcaactaaatgttatgcttcaatttttatacaatctgctatatatccgt 15873278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 21058102 - 21058156
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgt 106  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  21058102 atattatcaactaaatgttctacttcagtttttatacaatctgttatatatccgt 21058156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 7438701 - 7438739
Alignment:
Q  141 gacaattttgtagtccctttttcaagccttttctgttgt 179  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  7438701 gacagttttgtagtccctttttctagccttttctgttgt 7438739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 15682671 - 15682730
Alignment:
Q  52 atattatcaactatatgttctgcttca-------ttttttatacaatctgctatatatcc 104  Q
    |||||||||||||||||||||||||||       |||||||||||||| |||||||||||    
T  15682671 atattatcaactatatgttctgcttcatttttttttttttatacaatcagctatatatcc 15682730  T

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Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 12976806 - 12976604
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgtcnnnnnnnnn-ctttgttctttggagcgcctatgt---------- 140  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||          |||||||||||||||| |||||||              
T  12976806 atattatcaactatatgctctgcttcattttttatacaatctgctatatatccgtcttttttttttctttgttctttggagcacctatgtctatgtgcat 12976707  T
Q  141 ------gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatag 234  Q
          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12976706 gcacaggacaattttgtagtccctttttcaagccttttctattgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatag 12976607  T
Q  235 ttg 237  Q
    |||    
T  12976606 ttg 12976604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 52 - 237
Target Start/End: Original strand, 18293368 - 18293570
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgtcnnnnnnnnn-ctttgttctttggagcgcctatgt---------- 140  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||          |||||||||||||||| |||||||              
T  18293368 atattatcaactatatgttctacttcattttttatacaatctgctatatatccgtcttttttttttctttgttctttggagcacctatgtctatgtgcat 18293467  T
Q  141 ------gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatag 234  Q
          ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  18293468 gcacaggacaattttgtagtccctttttcaagccttttctgttgtgtttttattgatggcttattttataatatgcttagttaaaaaatgtgatagatag 18293567  T
Q  235 ttg 237  Q
    |||    
T  18293568 ttg 18293570  T

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Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 26447206 - 26447303
Alignment:
Q  140 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26447206 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgtgatagatagttg 26447303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 23543424 - 23543521
Alignment:
Q  140 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    ||||||||||||||||| |||||||||  |||| |  ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  23543424 tgacaattttgtagtccatttttcaagattttttttgtgtgtttttgttgatggattattttataatatgcttagttaaaaaatgtgatagatagttg 23543521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 23543324 - 23543375
Alignment:
Q  52 atattatcaactatatgttctgcttca-ttttttatacaatctgctatatat 102  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  23543324 atattatcaactatatgttctgcttcatttttttatacaatcagctatatat 23543375  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 17885360 - 17885262
Alignment:
Q  140 tgacaattttgtagtccctttttcaagccttttctgtt-gtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  17885360 tgacaattttgtagtccctttttcaagccttttttatttgtgtttttgttgatgggttattttataatatgcttagttaaaaaatgtgatagatagttg 17885262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 237
Target Start/End: Original strand, 25091661 - 25091872
Alignment:
Q  52 atattatcaactatatgttctgcttcatttttt----atacaatctgctatatatccgtcnnnnnnnnnctttgttctttggagcgcctatgt------- 140  Q
    |||||||||||||||||||||||||||||||||    |||||||| ||||||||||||||         ||||||||||||||||||||||||           
T  25091661 atattatcaactatatgttctgcttcattttttttttatacaatcagctatatatccgtctttttttttctttgttctttggagcgcctatgtctatgtg 25091760  T
Q  141 ---------gacaattttgtagtccctttttcaagccttttctgtt------gtgtttttgttgatggcttattttataatatgcttagttaaaaaatgc 225  Q
             |||||||||||||||| ||||||||||||||| | ||      |||||||||||||||| ||||||||||||||||||||||||||||| |    
T  25091761 catgcacatgacaattttgtagtccttttttcaagcctttttttttttgtgtgtgtttttgttgatgggttattttataatatgcttagttaaaaaatac 25091860  T
Q  226 gatagatagttg 237  Q
    ||||||||||||    
T  25091861 gatagatagttg 25091872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 4931470 - 4931548
Alignment:
Q  141 gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaa 221  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  4931470 gacaattttgtagtcccttttttaagccttttctgttgt--ttttgttgatgggttattttataatatgcttagttaaaaa 4931548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 8361584 - 8361683
Alignment:
Q  140 tgacaattttgtagtccctttttcaag--ccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    |||||||||||||||||||||||||||    |||| | |||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||    
T  8361584 tgacaattttgtagtccctttttcaagtttttttttttttgtgtttttgttgatgggttattttataatatgcttagttaaaaaatgttatagatagttg 8361683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 4931551 - 4931625
Alignment:
Q  164 aagccttttctgttgtgtttttgttgatggcttattttataatatgcttagtt-aaaaaatgcgatagatagttg 237  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  4931551 aagccttttctattgtgtttttgttgatggattattttataatatgcttagttaaaaaaatgtgatagatagttg 4931625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 4931360 - 4931411
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatc 103  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  4931360 atattatcaactaaatgttttgcttcagtttttatacaatctgctatatatc 4931411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 8361480 - 8361532
Alignment:
Q  52 atattatcaactatatgttctgcttca--ttttttatacaatctgctatatat 102  Q
    |||||||||||||||||||||||||||  |||||||||||||| || ||||||    
T  8361480 atattatcaactatatgttctgcttcattttttttatacaatcagccatatat 8361532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 27203812 - 27203604
Alignment:
Q  52 atattatcaactatatgttctgcttcatttttt-----atacaatctgctatatatccgtcnnnnnnnnnctttgttctttggagcgcctatgt------ 140  Q
    |||||||||||||||||||||||||||||||||     |||||||| ||||||||||||||         ||||||||||||||||||||||||          
T  27203812 atattatcaactatatgttctgcttcatttttttttttatacaatcagctatatatccgtctttttttttctttgttctttggagcgcctatgtctatgt 27203713  T
Q  141 ----------gacaattttgtagtccctttttcaagccttttctgtt-gtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgat 228  Q
              | |||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  27203712 gcatgcacatgccaattttgtagtccctttttcaagccttttttttttgtgtttttgttgatgggttattttataatatgcttagttaaaaaaatgcgat 27203613  T
Q  229 agatagttg 237  Q
    |||||||||    
T  27203612 agatagttg 27203604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 27858959 - 27858751
Alignment:
Q  52 atattatcaactatatgttctgcttcatttttt-----atacaatctgctatatatccgtcnnnnnnnnnctttgttctttggagcgcctatgt------ 140  Q
    |||||||||||||||||||||||||||||||||     |||||||| ||||||||||||||         ||||||||||||||||||||||||          
T  27858959 atattatcaactatatgttctgcttcatttttttttttatacaatcagctatatatccgtctttttttttctttgttctttggagcgcctatgtctatgt 27858860  T
Q  141 ----------gacaattttgtagtccctttttcaagccttttctgtt-gtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgat 228  Q
              | |||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  27858859 gcatgcacatgccaattttgtagtccctttttcaagccttttttttttgtgtttttgttgatgggttattttataatatgcttagttaaaaaaatgcgat 27858760  T
Q  229 agatagttg 237  Q
    |||||||||    
T  27858759 agatagttg 27858751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 25284 - 25187
Alignment:
Q  140 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    ||||||||||||||||||||||||||| ||||| |||||| ||||||||||| | || ||||||||||||||| ||||||||||||||||||||||||    
T  25284 tgacaattttgtagtccctttttcaagtcttttttgttgtatttttgttgataggttgttttataatatgctttgttaaaaaatgcgatagatagttg 25187  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 1365469 - 1365565
Alignment:
Q  140 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||||||| | || ||||||||||||||| ||||||||||||||||||||||||    
T  1365469 tgacaattttgtagtccctttttcaagcttttt-tgttgtatttttgttgataggttgttttataatatgctttgttaaaaaatgcgatagatagttg 1365565  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 42026296 - 42026092
Alignment:
Q  52 atattatcaactatatgttctgcttcatttttt--atacaatctgctatatatccgtcnnnnnnnnnctttgttctttggagcgcctatgt--------- 140  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||         ||||||| ||||||||||||||||             
T  42026296 atattatcaactatatgttctgcttcattttttttatacaatcagctatatatccgtctttttttttctttgttttttggagcgcctatgtctatgtgca 42026197  T
Q  141 -------gacaattttgtagtccctttttcaagccttttctgt-tgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagat 232  Q
           ||||||||||||||||||||||||||  |||| | | ||||||||||||||||| |||||||||||||| || |||||||||||| |||||||    
T  42026196 tgcacatgacaattttgtagtccctttttcaagttttttttttgtgtgtttttgttgatgggttattttataatatactcagttaaaaaatgtgatagat 42026097  T
Q  233 agttg 237  Q
    |||||    
T  42026096 agttg 42026092  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 14249677 - 14249473
Alignment:
Q  52 atattatcaactat-atgttctgcttcatttt--ttatacaatctgctatatatccgtcnnnnnnnnnctttgttctttggagcgcctatgt-------- 140  Q
    |||||||||||||| |||||||||||||||||  |||||||||| ||||||||||||||         ||||||||||||||||||||||||            
T  14249677 atattatcaactatcatgttctgcttcattttgtttatacaatcagctatatatccgtctttttttttctttgttctttggagcgcctatgtctatgtgc 14249578  T
Q  141 --------gacaattttgtagtccctttttcaagccttttctgt-tgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgataga 231  Q
            ||||||||||||||||||||| ||||  |||| | | ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  14249577 atgcacatgacaattttgtagtccctttt-caaggtttttttttgtgtgtttttgttgatgggttattttataatatgcttagttaaaaaatgtgataga 14249479  T
Q  232 tagttg 237  Q
    ||||||    
T  14249478 tagttg 14249473  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 13915574 - 13915496
Alignment:
Q  141 gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaa 221  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  13915574 gacaattttgtagtcccttttttaagccttttctgttgt--ttttgttgatgggttattttataatatgcttagttaaaaa 13915496  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 13915493 - 13915419
Alignment:
Q  164 aagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgatagatagttg 237  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||    
T  13915493 aagccttttctgttgtgtttttgttgatggattattttataatatgcttagttaaaaaaatgtgatagatagttg 13915419  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 13915678 - 13915627
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatc 103  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  13915678 atattatcaactaaatgttctgcttcagtttttatacaatctgctatatatc 13915627  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 38357442 - 38357538
Alignment:
Q  140 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||   |||||||||||||||||||||||||||||| |||| |||||||    
T  38357442 tgacaattttgtagtccctttttcaagctttttttgt-gtgtttttgttgataaattattttataatatgcttagttaaaaaatgtgatatatagttg 38357538  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 35684101 - 35684027
Alignment:
Q  164 aagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgatagatagttg 237  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||||||||||||    
T  35684101 aagccttttctgttgtgtttttgttgatggattattttataatatacttagttaaaaaaatgtgatagatagttg 35684027  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 35684182 - 35684104
Alignment:
Q  141 gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaa 221  Q
    ||||||||| |||||||||||| ||| ||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  35684182 gacaattttatagtcccttttttaagtcttttctgttgt--ttttgttgatgggttattttataatatgcttagttaaaaa 35684104  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 20776755 - 20776697
Alignment:
Q  179 tgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||    
T  20776755 tgtttttgttgatgagttattttataatatgcttagttaaaaaatgtgatagatagttg 20776697  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 38357330 - 38357420
Alignment:
Q  52 atattatcaactatatgttctgcttca--ttttttatacaatctgctatatatccgtcnnnnnnnnnctttgttctttggagcgcctatgt 140  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||         |||| |||||||||||||||||||    
T  38357330 atattatcaactatatgttctgcttcattttttttatacaatcagctatatatccgtctttttttttctttattctttggagcgcctatgt 38357420  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 35684310 - 35684259
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatc 103  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  35684310 atattatcaactaaatgttctgcttcagtttttatacaatctgctatatatc 35684259  T

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