View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_high_68 (Length: 232)

Name: NF8186_high_68
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_high_68
NF8186_high_68
[»] chr3 (3 HSPs)
chr3 (7-143)||(32765813-32765950)
chr3 (138-232)||(32765986-32766080)
chr3 (60-108)||(25599846-25599894)
[»] chr6 (1 HSPs)
chr6 (60-116)||(7903038-7903094)
[»] chr2 (1 HSPs)
chr2 (60-117)||(36514628-36514685)
[»] chr1 (2 HSPs)
chr1 (50-115)||(40942418-40942483)
chr1 (74-118)||(48911788-48911832)
[»] chr5 (1 HSPs)
chr5 (74-114)||(6588502-6588542)
[»] chr4 (1 HSPs)
chr4 (39-115)||(2103201-2103277)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 32765813 - 32765950
Alignment:
Q  7 tgtcttaactaaaataatttcaaaatcaattgaaaatatatcattttatttaattttatatctatcggttagttcagccattaattttatcaaacaattc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  32765813 tgtcttaactaaaataatttcaaaatcaattgaaaatatatcattttatttaattttatatttattggttagttcagctattaattttatcaaacaattc 32765912  T
Q  107 aaattcaatcatggagattac-agttattcgccatcaa 143  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  32765913 aaattcaatcatggagattacgagttattcgctatcaa 32765950  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 32765986 - 32766080
Alignment:
Q  138 catcaactaaactaacttactcgacatccaccacttttcaccatcttgttttattgacaaatttgtggtaacaccaaacatttatttgactcaaa 232  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32765986 catcaactaaactaacttacacgacatccaccacttttcaccatcttgttttattgacaaatttgtggtaacaccaaacatttatttgactcaaa 32766080  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 25599894 - 25599846
Alignment:
Q  60 ttttatatctatcggttagttcagccattaattttatcaaacaattcaa 108  Q
    |||||||| |||| ||||||| | ||||||||||||||||||| |||||    
T  25599894 ttttatatttatcagttagttaaaccattaattttatcaaacacttcaa 25599846  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 7903038 - 7903094
Alignment:
Q  60 ttttatatctatcggttagttcagccattaattttatcaaacaattcaaattcaatc 116  Q
    |||||||| ||||| |||||||| |||| ||||||| |||||| |||||||||||||    
T  7903038 ttttatatttatcgattagttcaaccataaattttaccaaacacttcaaattcaatc 7903094  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 36514628 - 36514685
Alignment:
Q  60 ttttatatctatcggttagttcagccattaattttatcaaacaattcaaattcaatca 117  Q
    |||||| | |||| ||||||||| ||||||||||||| ||||| | ||||||||||||    
T  36514628 ttttatgtttatcagttagttcaaccattaattttatgaaacactacaaattcaatca 36514685  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 40942418 - 40942483
Alignment:
Q  50 ttttatttaattttatatctatcggttagttcagccattaattttatcaaacaattcaaattcaat 115  Q
    |||||| | ||||||||| | || ||||||||| ||  |||||||| |||||||||||||||||||    
T  40942418 ttttatgtcattttatatttgtcagttagttcaaccgctaattttaccaaacaattcaaattcaat 40942483  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 48911832 - 48911788
Alignment:
Q  74 gttagttcagccattaattttatcaaacaattcaaattcaatcat 118  Q
    ||||||||| |||||||||||| |||| | |||||||||||||||    
T  48911832 gttagttcatccattaattttaccaaatacttcaaattcaatcat 48911788  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 6588502 - 6588542
Alignment:
Q  74 gttagttcagccattaattttatcaaacaattcaaattcaa 114  Q
    ||||||||| || ||||||||||| ||||||||||||||||    
T  6588502 gttagttcatccgttaattttatccaacaattcaaattcaa 6588542  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 2103277 - 2103201
Alignment:
Q  39 aaaatatatcattttatttaattttatatctatcggttagttcagccattaattttatcaaacaattcaaattcaat 115  Q
    |||| ||||| |||||| | ||||||||| |||  ||| ||||| |||||||||||| |||||| | ||||||||||    
T  2103277 aaaacatatctttttatgtcattttatatttataagtttgttcaaccattaattttaccaaacactacaaattcaat 2103201  T

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