View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_high_70 (Length: 230)

Name: NF8186_high_70

Description: NF8186

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF8186_high_70

[»] chr8 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 200; E-Value: 1e-109

Query Start/End: Original strand, 18 - 217

Target Start/End: Complemental strand, 34692223 - 34692024

Alignment:

Q	18	catcacgtgcacatgctcacaccagtcacgagggtccctaacgagaacaagtggcatttggcaaatgctttaagcaacatcctctgcatttgtgatctag	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34692223	catcacgtgcacatgctcacaccagtcacgagggtccctaacgagaacaagtggcatttggcaaatgctttaagcaacatcctctgcatttgtgatctag	34692124	T

Q	118	ttcaaacttcaaactcttgatcacttcattagtgatattgagatatatacgaacgaaggcatgcaccgtgaagtggtttaaaaatgaagtgatctttgtt	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34692123	ttcaaacttcaaactcttgatcacttcattagtgatattgagatatatacgaacgaaggcatgcaccgtgaagtggtttaaaaatgaagtgatctttgtt	34692024	T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 38; E-Value: 0.000000000001

Query Start/End: Original strand, 34 - 110

Target Start/End: Original strand, 38564328 - 38564402

Alignment:

Q	34	tcacaccagtcacgagggtccctaacgagaacaagtggcatttggcaaatgctttaagcaacatcctctgcatttgt	110	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38564328	tcacaccggtcacaagggtccctaatga--acgagtggtatatggcaaatgcgttaagcaacatcctctgcatttgt	38564402	T

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