View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_low_10 (Length: 458)

Name: NF8186_low_10
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_low_10
NF8186_low_10
[»] chr4 (20 HSPs)
chr4 (196-446)||(31670090-31670337)
chr4 (196-393)||(53722007-53722202)
chr4 (196-393)||(8892582-8892778)
chr4 (196-393)||(10317025-10317220)
chr4 (196-410)||(27186142-27186356)
chr4 (196-351)||(3770842-3770999)
chr4 (196-351)||(44147023-44147180)
chr4 (196-351)||(44151558-44151715)
chr4 (279-393)||(50627904-50628018)
chr4 (203-393)||(43683636-43683813)
chr4 (294-393)||(35842843-35842942)
chr4 (195-351)||(41884924-41885076)
chr4 (196-351)||(49274517-49274668)
chr4 (196-351)||(31359151-31359303)
chr4 (196-351)||(31354678-31354829)
chr4 (398-446)||(44147223-44147269)
chr4 (398-446)||(44151758-44151804)
chr4 (260-301)||(45976222-45976263)
chr4 (196-255)||(50628029-50628087)
chr4 (261-380)||(53785911-53786028)
[»] chr7 (13 HSPs)
chr7 (194-446)||(22901152-22901403)
chr7 (196-446)||(27761397-27761645)
chr7 (193-436)||(47419498-47419738)
chr7 (196-446)||(27756846-27757094)
chr7 (196-393)||(35705634-35705830)
chr7 (194-393)||(7466485-7466671)
chr7 (196-351)||(7940083-7940240)
chr7 (196-351)||(7944636-7944793)
chr7 (265-389)||(733632-733756)
chr7 (268-370)||(13828087-13828189)
chr7 (396-446)||(7939993-7940041)
chr7 (396-446)||(7944546-7944594)
chr7 (226-307)||(37355589-37355670)
[»] chr8 (22 HSPs)
chr8 (196-446)||(28644562-28644809)
chr8 (195-446)||(30410239-30410487)
chr8 (195-393)||(42234656-42234852)
chr8 (196-393)||(33071918-33072113)
chr8 (261-446)||(30405730-30405914)
chr8 (196-351)||(197684-197841)
chr8 (196-351)||(202202-202359)
chr8 (196-351)||(312521-312678)
chr8 (196-351)||(317039-317196)
chr8 (194-439)||(38757001-38757228)
chr8 (195-351)||(43812044-43812200)
chr8 (196-351)||(43807485-43807640)
chr8 (196-298)||(41949802-41949902)
chr8 (195-294)||(41945338-41945434)
chr8 (243-376)||(27435169-27435296)
chr8 (400-446)||(43807395-43807440)
chr8 (400-446)||(43811954-43811999)
chr8 (415-446)||(197595-197626)
chr8 (415-446)||(202113-202144)
chr8 (415-446)||(312432-312463)
chr8 (415-446)||(316950-316981)
chr8 (196-233)||(30405924-30405960)
[»] chr3 (14 HSPs)
chr3 (196-446)||(21847109-21847358)
chr3 (196-446)||(21850199-21850448)
chr3 (196-410)||(9697586-9697798)
chr3 (196-393)||(43547723-43547920)
chr3 (195-393)||(11004365-11004561)
chr3 (195-393)||(9105274-9105470)
chr3 (196-351)||(54171924-54172081)
chr3 (196-351)||(54167344-54167501)
chr3 (274-393)||(43554645-43554764)
chr3 (196-351)||(39399127-39399279)
chr3 (257-379)||(755889-756012)
chr3 (243-351)||(38175790-38175896)
chr3 (196-275)||(43554292-43554371)
chr3 (268-301)||(755824-755857)
[»] chr6 (13 HSPs)
chr6 (196-439)||(8315421-8315661)
chr6 (196-440)||(27552025-27552267)
chr6 (195-439)||(8319960-8320200)
chr6 (194-393)||(17096236-17096433)
chr6 (196-393)||(17895685-17895881)
chr6 (196-440)||(17779914-17780156)
chr6 (196-410)||(14531734-14531945)
chr6 (196-393)||(17886810-17887000)
chr6 (196-436)||(27574657-27574884)
chr6 (267-351)||(6440865-6440948)
chr6 (259-300)||(17163689-17163730)
chr6 (263-301)||(7888212-7888250)
chr6 (259-300)||(17159659-17159700)
[»] chr1 (7 HSPs)
chr1 (195-440)||(16588394-16588636)
chr1 (196-439)||(39793831-39794070)
chr1 (196-393)||(43591783-43591978)
chr1 (196-446)||(26311522-26311756)
chr1 (196-446)||(26316013-26316247)
chr1 (196-351)||(10504436-10504588)
chr1 (322-354)||(41879945-41879977)
[»] chr5 (23 HSPs)
chr5 (194-436)||(30695291-30695530)
chr5 (196-393)||(32485947-32486143)
chr5 (196-393)||(26336767-26336964)
chr5 (196-393)||(19502307-19502504)
chr5 (196-351)||(12018731-12018888)
chr5 (196-351)||(12023289-12023446)
chr5 (196-351)||(16794108-16794265)
chr5 (196-351)||(16798669-16798826)
chr5 (195-351)||(7103943-7104101)
chr5 (196-351)||(7099374-7099531)
chr5 (195-393)||(36632313-36632497)
chr5 (196-383)||(43384945-43385138)
chr5 (196-446)||(40367521-40367757)
chr5 (245-379)||(20830304-20830437)
chr5 (195-446)||(40371659-40371893)
chr5 (196-351)||(37682036-37682182)
chr5 (196-351)||(37658732-37658878)
chr5 (194-351)||(10274544-10274698)
chr5 (196-307)||(10277204-10277313)
chr5 (245-320)||(20808675-20808749)
chr5 (322-354)||(5733082-5733114)
chr5 (396-446)||(37658920-37658969)
chr5 (396-446)||(37682224-37682273)
[»] chr2 (11 HSPs)
chr2 (196-393)||(12999426-12999622)
chr2 (196-446)||(8055392-8055639)
chr2 (196-446)||(8050839-8051086)
chr2 (196-351)||(36670503-36670660)
chr2 (196-351)||(36675051-36675208)
chr2 (195-440)||(6463354-6463584)
chr2 (194-360)||(13270980-13271133)
chr2 (196-351)||(35950443-35950595)
chr2 (195-351)||(41093823-41093976)
chr2 (263-351)||(34590280-34590366)
chr2 (209-298)||(29767953-29768041)
[»] scaffold0440 (3 HSPs)
scaffold0440 (196-351)||(2980-3137)
scaffold0440 (196-351)||(7506-7662)
scaffold0440 (396-446)||(7704-7753)
[»] scaffold0044 (4 HSPs)
scaffold0044 (196-351)||(44865-45022)
scaffold0044 (196-351)||(49445-49602)
scaffold0044 (396-446)||(44775-44823)
scaffold0044 (396-446)||(49355-49403)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 196 - 446
Target Start/End: Original strand, 31670090 - 31670337
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31670090 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcaca-gtttgttttagtttgttatgaagtttgttacaagtttg 31670188  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgc 395  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31670189 ttagaggttagcagataagatctagagtttgttacattgcttctgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttga 31670288  T
Q  396 atgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  31670289 atgtagaatcaataaa--gatcatttacaatttcatcataactttcttctc 31670337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 196 - 393
Target Start/End: Original strand, 53722007 - 53722202
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  53722007 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 53722104  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||    
T  53722105 ttagaggctagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctatatattgtatataagctacctcctttgtacatttt 53722202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 196 - 393
Target Start/End: Complemental strand, 8892778 - 8892582
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||||  |||||||||||||||||||||||||||||||| ||||    
T  8892778 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacat-tttgttttagtttgttatgaagtttgttacaaatttg 8892680  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    |||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8892679 ttagagattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 8892582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 196 - 393
Target Start/End: Complemental strand, 10317220 - 10317025
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||| ||| ||| ||| |||| |||||||||  |||||| ||||||||||||||||||||||||||||||    
T  10317220 tgttagtttgttttaattcaagtttagttt-agttataatcacaatcagtgattaatcacac-tttgttgtagtttgttatgaagtttgttacaagtttg 10317123  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10317122 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 10317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 196 - 410
Target Start/End: Original strand, 27186142 - 27186356
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtt-tgttttagttt-gttatgaagtttgttacaagtt 293  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||||  || | ||||||||| ||||||||||||||||||||||    
T  27186142 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagtt 27186241  T
Q  294 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  27186242 tgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 27186341  T
Q  394 gcatgtagaatcaataa 410  Q
     |||| |||||||||||    
T  27186342 -catg-agaatcaataa 27186356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 3770842 - 3770999
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3770842 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3770941  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  3770942 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 44147023 - 44147180
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44147023 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44147122  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  44147123 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44147180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 44151558 - 44151715
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44151558 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44151657  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  44151658 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44151715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 279 - 393
Target Start/End: Complemental strand, 50628018 - 50627904
Alignment:
Q  279 agtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc 378  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50628018 agtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatataagctacc 50627919  T
Q  379 tcctttgtatatttt 393  Q
    |||||| ||||||||    
T  50627918 tcctttatatatttt 50627904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 203 - 393
Target Start/End: Complemental strand, 43683813 - 43683636
Alignment:
Q  203 ttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagagg 302  Q
    ||||||||||||||||||| ||||||||||| ||| ||| |||| |||||||||  |||||||||||||||||||||||||||||           ||||    
T  43683813 ttgttttaattcaagttta-ttttagtgataatcacaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgtta-----------gagg 43683727  T
Q  303 ttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    |||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43683726 ttagcaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatatttt 43683636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 294 - 393
Target Start/End: Original strand, 35842843 - 35842942
Alignment:
Q  294 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  35842843 tgttagaggttagcaaataagatctagagtttgttacaatgcttgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatatttt 35842942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 195 - 351
Target Start/End: Original strand, 41884924 - 41885076
Alignment:
Q  195 ttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    ||||| |||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||| | || | || ||||||||||||| |||||||||||||     
T  41884924 ttgttggtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaa-tttgttacaagtta 41885020  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||| |||||  ||||||| ||| ||||||||| | |||||| |||||||||||    
T  41885021 gttagagattagctcataagat-tagggtttgttacttagcttgtacttcaagcaac 41885076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 49274668 - 49274517
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||| | || | || ||||||||||||| ||||||||||||| |    
T  49274668 tgttagtttgttttaattcaagtttag-tttagtgatgatcataattagtggttaatcac-atttagattcagtttgttatgaa-tttgttacaagttag 49274572  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    |||||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  49274571 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 49274517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 31359151 - 31359303
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    ||||||||||||||||||||||||||| |||| ||||| ||| ||| ||||||||||||| | || | || |||||| |||||| ||||||||||||| |    
T  31359151 tgttagtttgttttaattcaagtttag-tttaatgataatcacaattagtggttaatcac-atttagattcagtttgctatgaattttgttacaagttag 31359248  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    |||||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  31359249 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 31359303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 31354678 - 31354829
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||| |||||||| |||||||||| | | ||| ||||||||||||| | || | || || |||||||||| |||||||||||||      
T  31354678 tgttagtttgttttaatttaagtttag-tttagtgataattacaattagtggttaatcac-atttagattcag-ttgttatgaattttgttacaagttac 31354774  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    |||| | |||||  ||||| | ||| ||||||||| | |||||| | |||||||||    
T  31354775 ttagggattagctcataaggt-tagggtttgttacttagcttgtacgtcaagcaac 31354829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 446
Target Start/End: Original strand, 44147223 - 44147269
Alignment:
Q  398 gtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||    
T  44147223 gtagaatcaataaag--atcatttacaatttcatcataactttcttctc 44147269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 446
Target Start/End: Original strand, 44151758 - 44151804
Alignment:
Q  398 gtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||    
T  44151758 gtagaatcaataaag--atcatttacaatttcatcataactttcttctc 44151804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 45976263 - 45976222
Alignment:
Q  260 ttgttttagtttgttatgaagtttgttacaagtttgttagag 301  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  45976263 ttgttttagtttgttttgaagtttgttacaagttttttagag 45976222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 50628087 - 50628029
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcac 255  Q
    |||||||||||||||||||||| |||||||||||| || ||| ||| |||| ||||||||    
T  50628087 tgttagtttgttttaattcaagattagttttagtg-taatcacaatcagtgattaatcac 50628029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 380
Target Start/End: Original strand, 53785911 - 53786028
Alignment:
Q  261 tgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctaga 360  Q
    |||||| |||||||| ||| ||||||||||||||||||||   ||||  |||   | ||| ||||||||||| |||||||||||||||||| || ||||     
T  53785911 tgtttttgtttgttaagaa-tttgttacaagtttgttagaaactagcttatatagt-tagggtttgttacatagcttgtgcttcaagcaacctaactagt 53786008  T
Q  361 cattgtatataagctacctc 380  Q
      | ||||||||||||||||    
T  53786009 tctagtatataagctacctc 53786028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 194 - 446
Target Start/End: Original strand, 22901152 - 22901403
Alignment:
Q  194 tttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 293  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22901152 tttgttagtttgttttaattaaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 22901251  T
Q  294 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22901252 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 22901351  T
Q  394 gcatgtagaatcaataaaagaatca-tttacaatttcatcataactttcttctc 446  Q
    | ||||||||||||||||   |||| ||||||| ||||||||||||||||||||    
T  22901352 gtatgtagaatcaataaa--gatcattttacaaattcatcataactttcttctc 22901403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 196 - 446
Target Start/End: Original strand, 27761397 - 27761645
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  27761397 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtttgttatgaagtttgttacaagtttg 27761494  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttg 394  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||     
T  27761495 ttagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttta 27761594  T
Q  395 catgtagaatcaataaaagaatcatttacaa-tttcatcataactttcttctc 446  Q
     ||||||||||||||||   ||||||||||| |||||||||||||||||||||    
T  27761595 tatgtagaatcaataaa--gatcatttacaattttcatcataactttcttctc 27761645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 193 - 436
Target Start/End: Complemental strand, 47419738 - 47419498
Alignment:
Q  193 gtttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagt 292  Q
    |||| ||| |||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  47419738 gtttattattttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagt 47419641  T
Q  293 ttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattt 392  Q
    || |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47419640 ttcttagaggttagcagataatatctagagtttgttacattgtttgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatattt 47419541  T
Q  393 t-gcatgtagaatcaataaaagaatcatttacaatttcatcataa 436  Q
    | | ||||||||||||||||  ||||| |||||||||||||||||    
T  47419540 tcgtatgtagaatcaataaa--aatcaattacaatttcatcataa 47419498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 196 - 446
Target Start/End: Original strand, 27756846 - 27757094
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||| ||  | |||||||||||||||||||||||||||||||||||    
T  27756846 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcgcat-tctgttttagtttgttatgaagtttgttacaagtttg 27756943  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttg 394  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||     
T  27756944 ttagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttta 27757043  T
Q  395 catgtagaatcaataaaagaatcatttacaa-tttcatcataactttcttctc 446  Q
     ||||||||||||||||   ||||||||||| |||||||||||||||||||||    
T  27757044 tatgtagaatcaataaa--gatcatttacaattttcatcataactttcttctc 27757094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 196 - 393
Target Start/End: Original strand, 35705634 - 35705830
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgtt-atgaagtttgttacaagttt 294  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| |||| |||||||||  |||||||||||||||| ||| ||||||||||||||||    
T  35705634 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcacat-tttgttttagtttgtttatggagtttgttacaagttt 35705731  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-tcctttgtatatttt 393  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||||||    
T  35705732 gttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac-cagctagacattgtatataagctacctttctttgtatatttt 35705830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 194 - 393
Target Start/End: Complemental strand, 7466671 - 7466485
Alignment:
Q  194 tttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 293  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||| | || |||||||||  |||||||||||||||||            ||||||    
T  7466671 tttgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacat-tttgttttagtttgtta------------caagtt 7466585  T
Q  294 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7466584 tgttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 7466485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 7940240 - 7940083
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7940240 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7940141  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  7940140 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7940083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 7944793 - 7944636
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7944793 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7944694  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  7944693 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 265 - 389
Target Start/End: Complemental strand, 733756 - 733632
Alignment:
Q  265 ttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacatt 364  Q
    ||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  733756 ttagtttgttatgaaatttgttacaattttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcgagcaacttagctagacatt 733657  T
Q  365 gtatataagctacctcctttgtata 389  Q
    |||||||||||||||||||||||||    
T  733656 gtatataagctacctcctttgtata 733632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 268 - 370
Target Start/End: Complemental strand, 13828189 - 13828087
Alignment:
Q  268 gtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgta 367  Q
    ||||||| ||||||||||||||||||||||||||  || |  |||| |  ||| || |||||||||||||||||||||||| || || ||||| | ||||    
T  13828189 gtttgttctgaagtttgttacaagtttgttagagtgtatctaataatagttagggtctgttacattgcttgtgcttcaagctacctaactagatagtgta 13828090  T
Q  368 tat 370  Q
    |||    
T  13828089 tat 13828087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 7940041 - 7939993
Alignment:
Q  396 atgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
    ||||||||||||||||   ||||||||||| ||||||||||||||||||||    
T  7940041 atgtagaatcaataaag--atcatttacaaattcatcataactttcttctc 7939993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 7944594 - 7944546
Alignment:
Q  396 atgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
    ||||||||||||||||   ||||||||||| ||||||||||||||||||||    
T  7944594 atgtagaatcaataaag--atcatttacaaattcatcataactttcttctc 7944546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 37355589 - 37355670
Alignment:
Q  226 tagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagc 307  Q
    |||||||| ||| | | |||||||||||| |   ||| ||||||||||||||||  ||||||||||||| |||||| |||||    
T  37355589 tagtgataatcacacttagtggttaatcatattattgctttagtttgttatgaaagttgttacaagtttcttagagattagc 37355670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 196 - 446
Target Start/End: Original strand, 28644562 - 28644809
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  28644562 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 28644659  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  28644660 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatatttttg 28644759  T
Q  395 catgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
    ||||||||||||||  |||||||| ||||||||||||||||| |||||||||    
T  28644760 catgtagaatcaat--aagaatcaattacaatttcatcataattttcttctc 28644809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 195 - 446
Target Start/End: Complemental strand, 30410487 - 30410239
Alignment:
Q  195 ttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  | ||||||| ||||||||||||||||||||||||||    
T  30410487 ttgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttaatttgttatgaagtttgttacaagttt 30410390  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-tttt 393  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| | ||||    
T  30410389 gttagaggttagtagataagatctagattttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacattttt 30410290  T
Q  394 gcatgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
      ||||||||||||||||   |||| |||||||||||||||||||||||||||    
T  30410289 atatgtagaatcaataaa--gatcaattacaatttcatcataactttcttctc 30410239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 195 - 393
Target Start/End: Complemental strand, 42234852 - 42234656
Alignment:
Q  195 ttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||| |||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  42234852 ttgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagttt 42234755  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  42234754 gttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatatttt 42234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 196 - 393
Target Start/End: Original strand, 33071918 - 33072113
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| |||| |||||||||  ||| |||||||||||||||||||||||||||||||||    
T  33071918 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcacac-tttcttttagtttgttatgaagtttgttacaagtttg 33072015  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33072016 ttggaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 33072113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 261 - 446
Target Start/End: Complemental strand, 30405914 - 30405730
Alignment:
Q  261 tgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctaga 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  30405914 tgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagaatttgttacattgcttgtacttcaagcaacctagctaga 30405815  T
Q  361 cattgtatataagctacctcctttgtata-ttttgcatgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
     |||||||||||||||||||||||||| | ||||  ||||||||||||||||   |||| |||||||||||||||||||||||||||    
T  30405814 tattgtatataagctacctcctttgtacatttttatatgtagaatcaataaa--gatcaattacaatttcatcataactttcttctc 30405730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 197841 - 197684
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  197841 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 197742  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  197741 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 202359 - 202202
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  202359 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 202260  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  202259 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 202202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 312678 - 312521
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312678 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 312579  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  312578 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 312521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 317196 - 317039
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  317196 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 317097  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  317096 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 317039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 194 - 439
Target Start/End: Original strand, 38757001 - 38757228
Alignment:
Q  194 tttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 293  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  | ||||||||||            |||||||||||    
T  38757001 tttgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtt------------tgttacaagtt 38757086  T
Q  294 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||||||||||    
T  38757087 tgttagaggttagtagataagatctagagtttgttacattgcttgtgattcaagcaacctagccagatattgtatataagctacctcctttgtatatttt 38757186  T
Q  394 gcatgtagaatcaataaaagaatcatttacaatttcatcataactt 439  Q
      ||| ||    ||||| || |||| ||||| ||||||||||||||    
T  38757187 atatgcag----aataatagtatcaattacattttcatcataactt 38757228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 195 - 351
Target Start/End: Complemental strand, 43812200 - 43812044
Alignment:
Q  195 ttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  43812200 ttgttagcttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtttgttatgaagtttgttacaagttt 43812103  T
Q  295 gttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    |||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  43812102 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 43807640 - 43807485
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||| ||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  43807640 tgttagcttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtttgttatgaagtttgttacaagtttg 43807543  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  43807542 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 41949802 - 41949902
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    ||||||||| |||||||||||| ||||||| ||||||| ||| ||| |||| |||||||||  | |||||||||||||| |||||||||||||||||| |    
T  41949802 tgttagtttcttttaattcaagcttagttt-agtgataatcacaatcagtgattaatcacac-tctgttttagtttgttttgaagtttgttacaagttgg 41949899  T
Q  296 tta 298  Q
    |||    
T  41949900 tta 41949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 41945338 - 41945434
Alignment:
Q  195 ttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    |||||||||||||||||||||||||||| |||||||||| ||| ||| | || |||||||| | |||||||||||||||||  ||||| |||||||||||    
T  41945338 ttgttagtttgttttaattcaagtttag-tttagtgataatcacaatcaatgattaatcac-actttgttttagtttgtta-caagttggttacaagttt 41945434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 376
Target Start/End: Complemental strand, 27435296 - 27435169
Alignment:
Q  243 agtggttaatcacaagtttgttttagtttgttatgaagt-ttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgc 341  Q
    ||||||||||||||   |||||||||||||||||||  | |||||||||||||| |      ||||| ||| ||  ||| ||||||||||| ||||||||    
T  27435296 agtggttaatcacattattgttttagtttgttatgagttattgttacaagtttgat------tagcacata-gagttagggtttgttacatagcttgtgc 27435204  T
Q  342 ttcaagcaacttagctagacattgtatataagcta 376  Q
    |||||||||| ||  |||| |||||||||||||||    
T  27435203 ttcaagcaacctaagtagatattgtatataagcta 27435169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 43807440 - 43807395
Alignment:
Q  400 agaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  43807440 agaatcaaaaaaaga-tcatttacaatttcatcataactttcttctc 43807395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 43811999 - 43811954
Alignment:
Q  400 agaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  43811999 agaatcaaaaaaaga-tcatttacaatttcatcataactttcttctc 43811954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 446
Target Start/End: Complemental strand, 197626 - 197595
Alignment:
Q  415 atcatttacaatttcatcataactttcttctc 446  Q
    ||||||||||||||||||||||||||||||||    
T  197626 atcatttacaatttcatcataactttcttctc 197595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 446
Target Start/End: Complemental strand, 202144 - 202113
Alignment:
Q  415 atcatttacaatttcatcataactttcttctc 446  Q
    ||||||||||||||||||||||||||||||||    
T  202144 atcatttacaatttcatcataactttcttctc 202113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 446
Target Start/End: Complemental strand, 312463 - 312432
Alignment:
Q  415 atcatttacaatttcatcataactttcttctc 446  Q
    ||||||||||||||||||||||||||||||||    
T  312463 atcatttacaatttcatcataactttcttctc 312432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 446
Target Start/End: Complemental strand, 316981 - 316950
Alignment:
Q  415 atcatttacaatttcatcataactttcttctc 446  Q
    ||||||||||||||||||||||||||||||||    
T  316981 atcatttacaatttcatcataactttcttctc 316950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 30405960 - 30405924
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgata 233  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  30405960 tgttagtttgttttaattcaagtttag-tttagtgata 30405924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 196 - 446
Target Start/End: Original strand, 21847109 - 21847358
Alignment:
Q  196 tgttagtttgtttt-aattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    |||||||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21847109 tgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcaca-gtttgttttagtttgttatgaagtttgttacaagttt 21847207  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-tttt 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||    
T  21847208 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21847307  T
Q  394 gcatgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
    | || |||||||||||||   ||||||||||||||||||||||||||||||||    
T  21847308 gtatatagaatcaataaa--gatcatttacaatttcatcataactttcttctc 21847358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 196 - 446
Target Start/End: Original strand, 21850199 - 21850448
Alignment:
Q  196 tgttagtttgtttt-aattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    |||||||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21850199 tgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcaca-gtttgttttagtttgttatgaagtttgttacaagttt 21850297  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-tttt 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||    
T  21850298 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21850397  T
Q  394 gcatgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
    | || |||||||||||||   ||||||||||||||||||||||||||||||||    
T  21850398 gtatatagaatcaataaa--gatcatttacaatttcatcataactttcttctc 21850448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 196 - 410
Target Start/End: Original strand, 9697586 - 9697798
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||||  ||  |||||||||||||||||||||||||||||||||    
T  9697586 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagtttg 9697685  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgc 395  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |    
T  9697686 ttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt-c 9697784  T
Q  396 atgtagaatcaataa 410  Q
    ||| |||||||||||    
T  9697785 atg-agaatcaataa 9697798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 196 - 393
Target Start/End: Original strand, 43547723 - 43547920
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||| ||||||||||||||||||||||||||||||| ||| ||| |||| ||||| |||  ||  |||||||||||||||||||||||||||||||||    
T  43547723 tgttagcttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagtttg 43547822  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  43547823 ttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatatttt 43547920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 195 - 393
Target Start/End: Complemental strand, 11004561 - 11004365
Alignment:
Q  195 ttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||  ||||||||  |||||||||| ||||||||||| |||||||||||||    
T  11004561 ttgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgaataatcacat-tttgttttagcttgttatgaagattgttacaagttt 11004464  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11004463 gttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatatttt 11004365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 195 - 393
Target Start/End: Original strand, 9105274 - 9105470
Alignment:
Q  195 ttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||| | || |||||||||  |||| |||||||||||||||||| ||||||||||||    
T  9105274 ttgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacat-tttgctttagtttgttatgaagtatgttacaagttt 9105371  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||    
T  9105372 gttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatatttt 9105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 54172081 - 54171924
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54172081 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 54171982  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  54171981 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 54167501 - 54167344
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54167501 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 54167402  T
Q  296 ttagaggttagcagataa--gatctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    |||||||||| || ||||  |   ||||||||||||||||||||||||||||||||||    
T  54167401 ttagaggttaccaaataagggtgttagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 274 - 393
Target Start/End: Original strand, 43554645 - 43554764
Alignment:
Q  274 tatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataag 373  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| || ||||||||||||||  ||||||||||||| ||    
T  43554645 tatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatatgag 43554744  T
Q  374 ctacctcctttgtatatttt 393  Q
    ||||||| ||||||||||||    
T  43554745 ctacctcttttgtatatttt 43554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 39399279 - 39399127
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||| | || | || ||||||||||||| ||||||||||||| |    
T  39399279 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaagttag 39399182  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    |||||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  39399181 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 39399127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 257 - 379
Target Start/End: Original strand, 755889 - 756012
Alignment:
Q  257 agtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga-tctagagtttgttacattgcttgtgcttcaagcaacttag 355  Q
    |||||||||||||||||| ||||||||||||||||||||||||||  || |  |||| |   ||| ||||||||||||||||||||||||||| || ||     
T  755889 agtttgttttagtttgttttgaagtttgttacaagtttgttagagtgtaactaataaaaggttagggtttgttacattgcttgtgcttcaagctacctaa 755988  T
Q  356 ctagacattgtatataagctacct 379  Q
    |||||   ||||||||||||||||    
T  755989 ctagatggtgtatataagctacct 756012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 351
Target Start/End: Complemental strand, 38175896 - 38175790
Alignment:
Q  243 agtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgct 342  Q
    ||||||||||||||  || |||| ||||||||||||| ||||||||||||| ||||||| |||||  ||||||| ||| ||||||||| | |||||| ||    
T  38175896 agtggttaatcacat-ttagtttcagtttgttatgaattttgttacaagttagttagagattagctcataagat-tagggtttgttacttagcttgtact 38175799  T
Q  343 tcaagcaac 351  Q
    |||||||||    
T  38175798 tcaagcaac 38175790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 196 - 275
Target Start/End: Original strand, 43554292 - 43554371
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgtta 275  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||| |||||  ||  |||||||||||||    
T  43554292 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattagtcacattttgtttttagtttgtta 43554371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Original strand, 755824 - 755857
Alignment:
Q  268 gtttgttatgaagtttgttacaagtttgttagag 301  Q
    ||||||| ||||||||||||||||||||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttagag 755857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 173; Significance: 7e-93; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 196 - 439
Target Start/End: Complemental strand, 8315661 - 8315421
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8315661 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 8315563  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgc 395  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||       
T  8315562 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttcat 8315463  T
Q  396 atgtagaatcaataaaagaatcatttacaatttcatcataactt 439  Q
    ||||||||||||||||   |||| || || ||||||||||||||    
T  8315462 atgtagaatcaataaa--gatcaatttcattttcatcataactt 8315421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 196 - 440
Target Start/End: Complemental strand, 27552267 - 27552025
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  27552267 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaggtttg 27552170  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt-- 393  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||      
T  27552169 ttaaacgttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttc 27552070  T
Q  394 gcatgtagaatcaataaaagaatcatttacaatttcatcataacttt 440  Q
    | ||| |||||||||  |||||||| |||||||||||||||||||||    
T  27552069 gtatggagaatcaat--aagaatcaattacaatttcatcataacttt 27552025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 195 - 439
Target Start/End: Complemental strand, 8320200 - 8319960
Alignment:
Q  195 ttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  8320200 ttgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacaa-tatgttttagtttgttatgaagtttgttacaagttt 8320103  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttg 394  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||      
T  8320102 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagaaacttagctagatattgtatataagctacctcctttgtacatttct 8320003  T
Q  395 catgtagaatcaataaaagaatcatttacaatttcatcataactt 439  Q
     ||||||||||||||||   |||| || || ||||||||||||||    
T  8320002 tatgtagaatcaataaa--gatcaatttcattttcatcataactt 8319960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 194 - 393
Target Start/End: Complemental strand, 17096433 - 17096236
Alignment:
Q  194 tttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 293  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| ||| |||| |||||||||  |||||||||||||||||||||||||||||||||||    
T  17096433 tttgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcacat-tttgttttagtttgttatgaagtttgttacaagtt 17096336  T
Q  294 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17096335 tgttagaggttagcagataagatctatagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtacatttt 17096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 196 - 393
Target Start/End: Complemental strand, 17895881 - 17895685
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||||  ||| |||||||||||| ||||||||||||||||||||    
T  17895881 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacat-tttattttagtttgttctgaagtttgttacaagtttg 17895783  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  17895782 ttagaggttagcaaataagatctagaatttgttacattgcttgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgtatttttt 17895685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 196 - 440
Target Start/End: Original strand, 17779914 - 17780156
Alignment:
Q  196 tgttagtttgtttt-aattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    |||||||||||||| |||||||||||||||| ||||||| ||| ||| || | |||||||||  ||||||||||||||||||||||||||||| ||||||    
T  17779914 tgttagtttgttttgaattcaagtttagttt-agtgataatcacaatcagagattaatcacat-tttgttttagtttgttatgaagtttgttaaaagttt 17780011  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt- 393  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||     
T  17780012 gttagaggctagtagataagatttagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctatctcctttgtacattttc 17780111  T
Q  394 gcatgtagaatcaataaaagaatcatttacaatttcatcataacttt 440  Q
    | |||||||||||||  |||||||| |||||||||||||||||||||    
T  17780112 gtatgtagaatcaat--aagaatcaattacaatttcatcataacttt 17780156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 196 - 410
Target Start/End: Complemental strand, 14531945 - 14531734
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||| ||| ||| ||| | || |||||||||  |||||||||||| |||||||||||||||||| |||||    
T  14531945 tgttagtttgttttaattcaagtttagttttagttataatcacaatcaatgattaatcacat-tttgttttagttcgttatgaagtttgttacaggtttg 14531847  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgc 395  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| |||||||||||||| |    
T  14531846 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatatttt-c 14531748  T
Q  396 atgtagaatcaataa 410  Q
    || ||||||||||||    
T  14531747 at-tagaatcaataa 14531734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 196 - 393
Target Start/End: Complemental strand, 17887000 - 17886810
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||||  |||||||||||||||||| ||||       |||||||    
T  17887000 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacat-tttgttttagtttgttataaagta------aagtttg 17886908  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  17886907 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcagcttagctagacattgtatataagctacctcctttgtatttttt 17886810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 196 - 436
Target Start/End: Complemental strand, 27574884 - 27574657
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  |||||||||||||||||||||||||||||            
T  27574884 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgtta-------- 27574795  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt-- 393  Q
       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||      
T  27574794 ---gaggttagcagataagatctaaagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgaacatttttc 27574698  T
Q  394 gcatgtagaatcaataaaagaatcatttacaatttcatcataa 436  Q
    | ||| | |||||||  |||||||| ||||||||||| |||||    
T  27574697 gtatggaaaatcaat--aagaatcaattacaatttcaccataa 27574657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 6440948 - 6440865
Alignment:
Q  267 agtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||||||||||| ||||||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  6440948 agtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 6440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 17163689 - 17163730
Alignment:
Q  259 tttgttttagtttgttatgaagtttgttacaagtttgttaga 300  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  17163689 tttgttttagtttgttttgaagtttgttacaagttggttaga 17163730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 301
Target Start/End: Complemental strand, 7888250 - 7888212
Alignment:
Q  263 ttttagtttgttatgaagtttgttacaagtttgttagag 301  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  7888250 ttttagtttgttttgaagtttgttacaactttgttagag 7888212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 17159659 - 17159700
Alignment:
Q  259 tttgttttagtttgttatgaagtttgttacaagtttgttaga 300  Q
    |||||||||||||||| ||| |||||||||||||| ||||||    
T  17159659 tttgttttagtttgttttgacgtttgttacaagttggttaga 17159700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 195 - 440
Target Start/End: Complemental strand, 16588636 - 16588394
Alignment:
Q  195 ttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  16588636 ttgttagtttgttttaattcaagtttagttt-agtgataatcacaataagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagttt 16588539  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-tttt 393  Q
    ||||||||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16588538 gttagaggttatcatataagatctagagtttgttacattgcttgtgttttaagcaacttagctagacattgtatataagctacctcctttgtatattttt 16588439  T
Q  394 gcatgtagaatcaataaaagaatcatttacaatttcatcataacttt 440  Q
    | ||| |||||||||  |||||||| |||||||||||||||||||||    
T  16588438 gtatggagaatcaat--aagaatcaattacaatttcatcataacttt 16588394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 196 - 439
Target Start/End: Original strand, 39793831 - 39794070
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||| ||  | |||||||||||||||||||||||||||||||||||    
T  39793831 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatctcat-tctgttttagtttgttatgaagtttgttacaagtttg 39793928  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgc 395  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||       
T  39793929 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttcat 39794028  T
Q  396 atgtagaatcaataaaagaatcatttacaatttcatcataactt 439  Q
    ||||||||||||||||   |||| ||||| ||||||||||||||    
T  39794029 atgtagaatcaataaa--gatcaattacattttcatcataactt 39794070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 196 - 393
Target Start/End: Complemental strand, 43591978 - 43591783
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| |||| |||||| ||  ||| ||||||||||||||||||||||||||||  |||    
T  43591978 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcgcac-tttattttagtttgttatgaagtttgttacaatattg 43591881  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43591880 ttagaggttagcaaataaaatctagagtttgttacattgcttgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatatttt 43591783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 196 - 446
Target Start/End: Original strand, 26311522 - 26311756
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  | ||||||||||            |||||||||||||    
T  26311522 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtt------------tgttacaagtttg 26311607  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgc 395  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||     
T  26311608 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtatattttgt 26311707  T
Q  396 atgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
    ||| ||||||||||||   |||| |||||||||||||||||||||||||||    
T  26311708 atgcagaatcaataaa--gatcaattacaatttcatcataactttcttctc 26311756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 196 - 446
Target Start/End: Original strand, 26316013 - 26316247
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  | ||||||||||            |||||||||||||    
T  26316013 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtt------------tgttacaagtttg 26316098  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgc 395  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||     
T  26316099 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtatattttgt 26316198  T
Q  396 atgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
    ||| ||||||||||||   |||| |||||||||||||||||||||||||||    
T  26316199 atgcagaatcaataaa--gatcaattacaatttcatcataactttcttctc 26316247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 10504436 - 10504588
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||| |||| |||||||| | || | || ||||||||||||| ||||||||||||| |    
T  10504436 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtgattaatcac-atttagattcagtttgttatgaattttgttacaagttag 10504533  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    |||||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  10504534 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 10504588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 41879945 - 41879977
Alignment:
Q  322 gtttgttacattgcttgtgcttcaagcaactta 354  Q
    ||||||||| |||||||||||||||||||||||    
T  41879945 gtttgttactttgcttgtgcttcaagcaactta 41879977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 194 - 436
Target Start/End: Original strand, 30695291 - 30695530
Alignment:
Q  194 tttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 293  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  30695291 tttgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtt 30695388  T
Q  294 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  30695389 tgttagaggttagtatataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 30695488  T
Q  394 -gcatgtagaatcaataaaagaatcatttacaatttcatcataa 436  Q
     | ||||||||||||||||   |||| |||||||||||||||||    
T  30695489 cgtatgtagaatcaataaa--gatcaattacaatttcatcataa 30695530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 196 - 393
Target Start/End: Complemental strand, 32486143 - 32485947
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| | || |||||||||  |||||||||||||||||||||||||||||||||||||    
T  32486143 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 32486045  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||| ||||||||    
T  32486044 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaacctccttagctagacattgtatataagctacctcctttatatatttt 32485947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 196 - 393
Target Start/End: Complemental strand, 26336964 - 26336767
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||| ||||||||||| ||| |||  ||| |||||||||  ||  |||||||||||||||| |||||||||| |||||    
T  26336964 tgttagtttgttttaattcaagtttaattttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgtttg 26336865  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26336864 ttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 26336767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 196 - 393
Target Start/End: Original strand, 19502307 - 19502504
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaa-tcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    |||||||||||||||||| ||||||||||||||||||| ||| ||| |||| |||| |||||  ||||||||||||||||||||||||||||||||||||    
T  19502307 tgttagtttgttttaatttaagtttagttttagtgataatcacaatcagtgattaaatcacat-tttgttttagtttgttatgaagtttgttacaagttt 19502405  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    |||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  19502406 gttagaggttagaaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatatttt 19502504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 12018731 - 12018888
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12018731 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12018830  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  12018831 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 12023289 - 12023446
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12023289 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12023388  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  12023389 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 16794108 - 16794265
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16794108 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16794207  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  16794208 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16794265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 16798669 - 16798826
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16798669 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16798768  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  16798769 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 195 - 351
Target Start/End: Complemental strand, 7104101 - 7103943
Alignment:
Q  195 ttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7104101 ttgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 7104002  T
Q  295 gttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    |||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  7104001 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 7099531 - 7099374
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7099531 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7099432  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  7099431 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 195 - 393
Target Start/End: Original strand, 36632313 - 36632497
Alignment:
Q  195 ttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||  ||||||||  ||||||||||||            ||||||||||||    
T  36632313 ttgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgaataatcacac-tttgttttagtt------------tgttacaagttt 36632398  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36632399 gttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 36632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 196 - 383
Target Start/End: Original strand, 43384945 - 43385138
Alignment:
Q  196 tgttagtttgtttt--aattcaagtttagttt----tagtgatagtcataataagtggttaatcacaagtttg-ttttagtttgttatgaagtttgttac 288  Q
    ||||||||||||||  ||||||||||||||||    |||||||| ||||||| ||||||||||||||  |||| ||||||||||||||||||||||||||    
T  43384945 tgttagtttgttttttaattcaagtttagtttagtttagtgataatcataattagtggttaatcaca--tttgcttttagtttgttatgaagtttgttac 43385042  T
Q  289 aagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatat-aagctacctcctt 383  Q
    |||||||||||| ||||||| |||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43385043 aagtttgttagaagttagcaaataaaatctagggtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaagctacctcctt 43385138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 196 - 446
Target Start/End: Complemental strand, 40367757 - 40367521
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| || | |||||||||  |||||||||||||||||            ||||||||    
T  40367757 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagagattaatcacat-tttgttttagtttgtta------------caagtttg 40367672  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagc-aacttagctagacattgtatataagctacctcctttgtatatttt- 393  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||||||||||||||| |||||     
T  40367671 ttagaggctagtagataagatctagagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatataagctacctcctttgtacattttc 40367572  T
Q  394 gcatgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
      |||||||||||||  |||||||| ||||||||||||||||| |||||||||    
T  40367571 atatgtagaatcaat--aagaatcaattacaatttcatcataattttcttctc 40367521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 245 - 379
Target Start/End: Complemental strand, 20830437 - 20830304
Alignment:
Q  245 tggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttc 344  Q
    ||||||||||||  || |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||    
T  20830437 tggttaatcacat-ttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttc 20830339  T
Q  345 aagcaacttagctagacattgtatataagctacct 379  Q
    |||||||||| ||||||||||||||||||||||||    
T  20830338 aagcaacttaactagacattgtatataagctacct 20830304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 195 - 446
Target Start/End: Complemental strand, 40371893 - 40371659
Alignment:
Q  195 ttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||| || | |||||||||  |||||||||||||||||||||| |||||||||||||    
T  40371893 ttgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagagattaatcacat-tttgttttagtttgttatgaagattgttacaagttt 40371796  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt- 393  Q
    |||||||| ||| |||||||||||||||||| |||||||| |||||              | |||| |||||||||||||||||||||||||| |||||     
T  40371795 gttagaggctagtagataagatctagagtttattacattgtttgtg--------------gttagatattgtatataagctacctcctttgtacattttc 40371710  T
Q  394 gcatgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
      |||||||||||||  ||||||||  |||||||||||||||| |||||||||    
T  40371709 atatgtagaatcaat--aagaatcaactacaatttcatcataattttcttctc 40371659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 37682036 - 37682182
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||           |||||||    
T  37682036 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 37682124  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  37682125 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37682182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 37658732 - 37658878
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||           |||||||    
T  37658732 tgttagtttgttttaattcaagtttagttttagtcataatcataatcagtggttaatcacaagtttgttttagcttgttatg-----------aagtttg 37658820  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  37658821 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37658878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 351
Target Start/End: Original strand, 10274544 - 10274698
Alignment:
Q  194 tttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 293  Q
    ||||||||||||||||||||||||||||| |||||||||| ||| ||| | ||||||||||| | || | || ||||||||||||| |||||||||||||    
T  10274544 tttgttagtttgttttaattcaagtttag-tttagtgataatcacaattaatggttaatcac-atttagattcagtttgttatgaattttgttacaagtt 10274641  T
Q  294 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 351  Q
     ||||||| |||||  ||||| | ||| ||||||||  | |||||| |||||||||||    
T  10274642 agttagagattagctcataaggt-tagggtttgttatttagcttgtacttcaagcaac 10274698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 196 - 307
Target Start/End: Original strand, 10277204 - 10277313
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||| | || | || ||||||||||||| ||||||||||||| |    
T  10277204 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaagttag 10277301  T
Q  296 ttagaggttagc 307  Q
    |||||| |||||    
T  10277302 ttagagattagc 10277313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 20808749 - 20808675
Alignment:
Q  245 tggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctag 320  Q
    ||||||||||||  || |||| |||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  20808749 tggttaatcacat-ttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataagatctag 20808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 5733082 - 5733114
Alignment:
Q  322 gtttgttacattgcttgtgcttcaagcaactta 354  Q
    ||||||||| |||||||||||||||||||||||    
T  5733082 gtttgttactttgcttgtgcttcaagcaactta 5733114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 446
Target Start/End: Original strand, 37658920 - 37658969
Alignment:
Q  396 atgtagaatcaataaaagaatcatttacaattt-catcataactttcttctc 446  Q
    ||||||||||||||||   |||||||||||||| ||||||||||||||||||    
T  37658920 atgtagaatcaataaag--atcatttacaattttcatcataactttcttctc 37658969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 446
Target Start/End: Original strand, 37682224 - 37682273
Alignment:
Q  396 atgtagaatcaataaaagaatcatttacaattt-catcataactttcttctc 446  Q
    ||||||||||||||||   |||||||||||||| ||||||||||||||||||    
T  37682224 atgtagaatcaataaag--atcatttacaattttcatcataactttcttctc 37682273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 7e-84; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 196 - 393
Target Start/End: Complemental strand, 12999622 - 12999426
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||| ||||||||||||||||||| | | ||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  12999622 tgttagtttgttttaatttaagtttagttttagtgataataacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 12999524  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 393  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12999523 ttagaggttagcagataagatctagagtttgttacattacttgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatatttt 12999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 196 - 446
Target Start/End: Original strand, 8055392 - 8055639
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  | | |||||||||||||||||||||||| ||||||||    
T  8055392 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctattttagtttgttatgaagtttgttgcaagtttg 8055489  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgc 395  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||       
T  8055490 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttcat 8055589  T
Q  396 atgtagaatcaataaaagaatcatttacaa-tttcatcataactttcttctc 446  Q
    ||||||||||||||||   ||| ||||||| |||||||||||||||||||||    
T  8055590 atgtagaatcaataaa--gatcttttacaattttcatcataactttcttctc 8055639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 196 - 446
Target Start/End: Original strand, 8050839 - 8051086
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||  | | |||||||||||||||||||||||||||||||||    
T  8050839 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctattttagtttgttatgaagtttgttacaagtttg 8050936  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgc 395  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||       
T  8050937 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtacatttcat 8051036  T
Q  396 atgtagaatcaataaaagaatcatttacaa-tttcatcataactttcttctc 446  Q
    ||||||||||||||||   ||| ||||||| |||||||||||||||||||||    
T  8051037 atgtagaatcaataaa--gatcttttacaattttcatcataactttcttctc 8051086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 36670503 - 36670660
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36670503 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 36670602  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  36670603 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36670660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 36675051 - 36675208
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36675051 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 36675150  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  36675151 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36675208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 195 - 440
Target Start/End: Complemental strand, 6463584 - 6463354
Alignment:
Q  195 ttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    |||||||||||| |||||||||||||||||| ||||||| ||| ||| ||||||||||||||  |||||||||||||||||            |||||||    
T  6463584 ttgttagtttgtcttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgtta------------caagttt 6463499  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt- 393  Q
    |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||     
T  6463498 gttagaggttagtagataagatctagagtttgttacattatttgtgcttcaagcaacctagctagatattgtatataagctacctcctttgtacatttta 6463399  T
Q  394 gcatgtagaatcaataaaagaatcatttacaatttcatcataacttt 440  Q
    | ||||||||||||||||   |||| |||||||||||||||||||||    
T  6463398 gtatgtagaatcaataaa--gatcaattacaatttcatcataacttt 6463354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 194 - 360
Target Start/End: Complemental strand, 13271133 - 13270980
Alignment:
Q  194 tttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 293  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||||| |||  ||| ||||||||||||||            |||||    
T  13271133 tttgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacac-tttattttagtttgttat------------aagtt 13271047  T
Q  294 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctaga 360  Q
    ||||||||||||| | |||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  13271046 tgttagaggttagtaaataagatctaaagtttgttacattgtttttgcttcaagcaacttagctaga 13270980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 35950595 - 35950443
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||| | || | || ||||||||||||| ||||||||||||| |    
T  35950595 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttaggttcagtttgttatgaattttgttacaagttag 35950498  T
Q  296 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    |||||| |||||   |||| | ||| ||||||||| | |||||| |||||||||||    
T  35950497 ttagagattagctcgtaaggt-tagggtttgttacttagcttgtacttcaagcaac 35950443  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 351
Target Start/End: Original strand, 41093823 - 41093976
Alignment:
Q  195 ttgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 294  Q
    ||||| |||||||||||||||| |||||||| ||||||| ||| ||| |||| ||||||| |  || | || ||||||||||||| |||||||||| ||     
T  41093823 ttgttggtttgttttaattcaaatttagttt-agtgataatcacaattagtgattaatcatat-ttagattcagtttgttatgaattttgttacaaatta 41093920  T
Q  295 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  41093921 gttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 41093976  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 351
Target Start/End: Original strand, 34590280 - 34590366
Alignment:
Q  263 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| || |||  ||| |||||||| || |||||||||| |||||||    
T  34590280 ttttagtttgttatgaa-tttgttacaagtttgttagagattagcatat-agagttagggtttgttatatagcttgtgctttaagcaac 34590366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 29767953 - 29768041
Alignment:
Q  209 taattcaagtttagttttagtgatagtcataat-aagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgtta 298  Q
    ||||||||||||||||| ||||||| |||| || || || || ||||||  |||||||||||||||| | |||||||||||||||| ||||    
T  29767953 taattcaagtttagttt-agtgataatcatgattaattgattgatcacac-tttgttttagtttgttttaaagtttgttacaagttggtta 29768041  T

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Target: scaffold0440 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 2980 - 3137
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2980 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3079  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  3080 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 196 - 351
Target Start/End: Original strand, 7506 - 7662
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  7506 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttg 7604  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||| ||||||||||    
T  7605 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgtttcaagcaac 7662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 446
Target Start/End: Original strand, 7704 - 7753
Alignment:
Q  396 atgtagaatcaataaaagaatcatttacaattt-catcataactttcttctc 446  Q
    ||||||||||||||||   |||||||||||||| ||||||||||||||||||    
T  7704 atgtagaatcaataaag--atcatttacaattttcatcataactttcttctc 7753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 45022 - 44865
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45022 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44923  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  44922 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 196 - 351
Target Start/End: Complemental strand, 49602 - 49445
Alignment:
Q  196 tgttagtttgttttaattcaagtttagttttagtgatagtcataataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 295  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49602 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 49503  T
Q  296 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 351  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  49502 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 49445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 44823 - 44775
Alignment:
Q  396 atgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
    ||||||||||||||||   ||||||||||| ||||||||||||||||||||    
T  44823 atgtagaatcaataaag--atcatttacaaattcatcataactttcttctc 44775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 49403 - 49355
Alignment:
Q  396 atgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 446  Q
    ||||||||||||||||   ||||||||||| ||||||||||||||||||||    
T  49403 atgtagaatcaataaag--atcatttacaaattcatcataactttcttctc 49355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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