View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_12 (Length: 431)
Name: NF8186_low_12
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_12 |
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| [»] chr4 (2 HSPs) |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 86 - 431
Target Start/End: Complemental strand, 33880481 - 33880140
Alignment:
| Q |
86 |
gaacacacaacactattgagttcagaattgagaatatatcaaaacagatcaagagaattgagaatcaaagaaaaaggggaaaattaagatggnnnnnnng |
185 |
Q |
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| T |
33880481 |
gaacacacaacactattgagttcagaattgagaat----caaaacagatcaagagaattgagaatcaaagaaaaaggggaaaattaagatggaaaaaaag |
33880386 |
T |
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| Q |
186 |
aacaccttcgacatggtttcagacgattcagatcacaaattcctcagccacaacatcagtggaaactgcttcagagatacaaaaagcgccctctacaaac |
285 |
Q |
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| T |
33880385 |
aacaccttcgaaatggtttcagacgattcagatcacaaattcctcagccacaacatcagtggaaactgcttcagagatacaaaaagcgccctctacaaac |
33880286 |
T |
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| Q |
286 |
gaatcatgaaagagtggaaaattctcgaaaacaatctccccgattccatctacgtcaaagcctatgaaacccgcatcgatttactccgtgctgttatcgt |
385 |
Q |
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| T |
33880285 |
gaatcatgaaagagtggaaaattctcgaaaacaatctccccgattccatctacgtcaaagcatatgaaacccgcatcgatttactccgtgccgttatcgt |
33880186 |
T |
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| Q |
386 |
cggcgcagccggtacaccttatcacgacggtctgttcttctttgac |
431 |
Q |
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| T |
33880185 |
cagcgcagccggtacaccttatcacgacggtctgttcttctttgac |
33880140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 33880515 - 33880480
Alignment:
| Q |
17 |
tgaatatacggaaagattaggtcaaaaactacgaga |
52 |
Q |
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| T |
33880515 |
tgaatatacggaaagattaggtcaaaaaatacgaga |
33880480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 192 - 431
Target Start/End: Original strand, 16683667 - 16683906
Alignment:
| Q |
192 |
ttcgacatggtttcagacgattcagatcacaaattcctcagccacaacatcagtggaaactgcttcagagatacaaaaagcgccctctacaaacgaatca |
291 |
Q |
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| T |
16683667 |
ttcgacttggtttcagacgattccgatcacaaataccgcctcaacaacatcggcggaaattgcttcagcgacacaaaaagtgccatatataaaagaatca |
16683766 |
T |
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| Q |
292 |
tgaaagagtggaaaattctcgaaaacaatctccccgattccatctacgtcaaagcctatgaaacccgcatcgatttactccgtgctgttatcgtcggcgc |
391 |
Q |
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| T |
16683767 |
tgaaagagtggaaaatcctcgaaaagaatctccctgattccatctacgtcagagcctacgaacgccgtattgatttactacgcgccgtcatcgttggcgc |
16683866 |
T |
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| Q |
392 |
agccggtacaccttatcacgacggtctgttcttctttgac |
431 |
Q |
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| T |
16683867 |
tgctggtacaccttaccacgacagcctcttcttctttgac |
16683906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 192 - 431
Target Start/End: Original strand, 17657903 - 17658142
Alignment:
| Q |
192 |
ttcgacatggtttcagacgattcagatcacaaattcctcagccacaacatcagtggaaactgcttcagagatacaaaaagcgccctctacaaacgaatca |
291 |
Q |
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|||||| |||||||||||||||| |||||||||| || | | |||||||| | ||||| |||||||| || |||||||| ||| | || ||| |||||| |
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| T |
17657903 |
ttcgacttggtttcagacgattccgatcacaaataccgcctcaacaacatcggcggaaattgcttcagcgacacaaaaagtgccatatataaaagaatca |
17658002 |
T |
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| Q |
292 |
tgaaagagtggaaaattctcgaaaacaatctccccgattccatctacgtcaaagcctatgaaacccgcatcgatttactccgtgctgttatcgtcggcgc |
391 |
Q |
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| T |
17658003 |
tgaaagagtggaaaatcctcgaaaagaatctccctgattccatctacgtcagagcctacgaacgccgtattgatttactacgcgccgtcatcgttggcgc |
17658102 |
T |
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| Q |
392 |
agccggtacaccttatcacgacggtctgttcttctttgac |
431 |
Q |
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| T |
17658103 |
tgctggtacaccttaccacgacagcctcttcttctttgac |
17658142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 192 - 427
Target Start/End: Original strand, 16665265 - 16665500
Alignment:
| Q |
192 |
ttcgacatggtttcagacgattcagatcacaaattcctcagccacaacatcagtggaaactgcttcagagatacaaaaagcgccctctacaaacgaatca |
291 |
Q |
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| T |
16665265 |
ttcgacttggtttcagacgattccgatcacaaataccgactcgacaacatcggcggaaattgcttcagcaatacaagaagttccatatacaaaagaatca |
16665364 |
T |
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| Q |
292 |
tgaaagagtggaaaattctcgaaaacaatctccccgattccatctacgtcaaagcctatgaaacccgcatcgatttactccgtgctgttatcgtcggcgc |
391 |
Q |
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|||||||||||||||| |||||||| |||||||| |||||||||||||| | ||||||||||| ||| || ||||| || || || || ||||| ||||| |
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| T |
16665365 |
tgaaagagtggaaaatcctcgaaaagaatctccctgattccatctacgttagagcctatgaaagccgtattgatttgctacgcgcagtcatcgttggcgc |
16665464 |
T |
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| Q |
392 |
agccggtacaccttatcacgacggtctgttcttctt |
427 |
Q |
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| T |
16665465 |
tgccggtacaccttaccatgacggcctcttcttctt |
16665500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 192 - 427
Target Start/End: Original strand, 17639635 - 17639870
Alignment:
| Q |
192 |
ttcgacatggtttcagacgattcagatcacaaattcctcagccacaacatcagtggaaactgcttcagagatacaaaaagcgccctctacaaacgaatca |
291 |
Q |
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| T |
17639635 |
ttcgacttggtttcagacgattccgatcacaaataccgactcgacaacatcggcggaaattgcttcagcaatacaagaagttccatatacaaaagaatca |
17639734 |
T |
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| Q |
292 |
tgaaagagtggaaaattctcgaaaacaatctccccgattccatctacgtcaaagcctatgaaacccgcatcgatttactccgtgctgttatcgtcggcgc |
391 |
Q |
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| T |
17639735 |
tgaaagagtggaaaatcctcgaaaagaatctccctgattccatctacgttagagcctatgaaagccgtattgatttgctacgcgcagtcatcgttggcgc |
17639834 |
T |
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| Q |
392 |
agccggtacaccttatcacgacggtctgttcttctt |
427 |
Q |
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|||||||||||||| || ||||| || |||||||| |
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| T |
17639835 |
tgccggtacaccttaccatgacggcctcttcttctt |
17639870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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