View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_13 (Length: 430)
Name: NF8186_low_13
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 4 - 414
Target Start/End: Complemental strand, 46182820 - 46182410
Alignment:
| Q |
4 |
cggtcatatatgtaaatatgttacaaacctgattgaaataatttctagcctttttagccatttcttctgcagcactttttagccattctgggctgggaca |
103 |
Q |
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| T |
46182820 |
cggtcatatatgtaaatatgttgcaaacctgattgaaataatttctagcctttttagccatttcttctgcagcactttttagccattctgggctgggaca |
46182721 |
T |
|
| Q |
104 |
tgactctctgcaggtagcaattgtttctgaaatgtgatccatgaagaaaaggacaagcccaactgttggcacattgctcgtgcagaggtcgtttgtcgtc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46182720 |
tgactctctgcaggtagcaattgtttctgaaatgtgatccatgaagaaaaggacaagccccactgttggcacattgctcgtgcagaggtcgtttgtcgtc |
46182621 |
T |
|
| Q |
204 |
ttgtagaatggctcaagatattgatgcatgatgttaaccacacttttttcagaagggctcagcagtatcctactgcctagtgtctcctcatatttatgaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46182620 |
ttgtagaatggctcaagatattgatgcatgatgttaaccacacttttttcagaagggctcagcagtatcctactgcctagtgtctcctcatatttatgaa |
46182521 |
T |
|
| Q |
304 |
taaccgaatccactgatttaccagcctgcatcaccaaaaatatgcaatgatttaccgtattcattgcttctaattttgaatttgagtgcatgtgagagtg |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46182520 |
taaccgaatccactgatttaccagcctgcatcaccaaaaatatgcaatgatttaccgtattcattgcttctaattttgaatttgagtgcatgtgagagtg |
46182421 |
T |
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| Q |
404 |
taaagtgtgat |
414 |
Q |
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| T |
46182420 |
tgaagtgtgat |
46182410 |
T |
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