View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_14 (Length: 429)
Name: NF8186_low_14
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 32550562 - 32550966
Alignment:
| Q |
19 |
gaagcttgttgagaggctcttttccaaggagcatcagttgatcatggtttgaccctccgaacttggaccaatgttgccggcgataaatctaaagggaagt |
118 |
Q |
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| T |
32550562 |
gaagcttgttgagaggctcttttccaaggagcatcagttgatcatggtttgaccctccaaacttggactaatgttgccggcgataaatctaaagggaagt |
32550661 |
T |
|
| Q |
119 |
tatatggagctggtaacttagctgtcaactaccagaagggaattgcacatccctcaagctcaccctgaatcatggtgaggggtcctcacaccagcctgag |
218 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32550662 |
tatatggagctggtaacttagctgtcaaccaccagaagggaattgcacatccctcaagctcaccctgaatcatggtgagggatcctcacaccagcctgag |
32550761 |
T |
|
| Q |
219 |
atgacccatgaaatgcgcgagctgattcaaaaattgacacaagagcagctcatacaacaaatggcgagtcaggaggctcttgtgcaaaaattgcttgaac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
32550762 |
atgacccatgaaatgcgcgagctgattcaaaaattgacacaagagcagctcatacaacaaatggcgagtcaggaggcccttatgcaaaaattgcttgaac |
32550861 |
T |
|
| Q |
319 |
gaa-------------------aatatgaggagcaattggcccaatttaagcaagcacatgctgggaggtcaggtgagcatgtgcaagttgaagagcctg |
399 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32550862 |
gaaaacggtcatatatatatataatatgaggagcaattggcccaatttaagcaagcacatgctggaaggtcaggtgagcatgtgcaagttgaagagcctg |
32550961 |
T |
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| Q |
400 |
cccac |
404 |
Q |
| |
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||||| |
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| T |
32550962 |
cccac |
32550966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 56 - 357
Target Start/End: Complemental strand, 40543015 - 40542707
Alignment:
| Q |
56 |
ttgatcatggtttgaccctccgaacttggaccaatgttgccggcgataaatctaaagggaagttatatggagctggtaacttagctgtcaactaccagaa |
155 |
Q |
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|||||||| ||||| ||||| |||||||||||| |||| ||||||||| | ||||| || ||||||| || |||||||| | || |||| || ||| |
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| T |
40543015 |
ttgatcatagtttggccctctaaacttggaccaaagttgttggcgataaaaccaaaggaaatctatatggtgccggtaacttggttgctaactgccggaa |
40542916 |
T |
|
| Q |
156 |
gggaattgca-catccctcaagctcaccctgaatcatggtgaggggtcctcacaccagcctgagatgacccatgaaatgcgcgagctgattcaaaaattg |
254 |
Q |
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||| ||||| || | |||| || ||||| ||||||||||| || |||| || ||||||| ||||| ||||||| | || || ||||||| |||| |
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| T |
40542915 |
gggtgttgcagcaactctcagacttacccttaatcatggtgaaggatccttccaacagcctgcactgacctctgaaatgtgtgaccttattcaaagattg |
40542816 |
T |
|
| Q |
255 |
acacaagagcagctcatacaacaaatggcgagtcaggaggctcttgtgcaaaaattgctt------gaacgaaaatatgaggagcaattggcccaattta |
348 |
Q |
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|| ||||||||||||| |||||||||||||||||| ||||| |||||||| | |||||| |||||||||||||||||||| || | || |||| |
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| T |
40542815 |
actcaagagcagctcacacaacaaatggcgagtcacgaggccgttgtgcaagatttgcttagccgacaacgaaaatatgaggagcaactgactcagttta |
40542716 |
T |
|
| Q |
349 |
agcaagcac |
357 |
Q |
| |
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|||||||| |
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| T |
40542715 |
ggcaagcac |
40542707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 55 - 360
Target Start/End: Complemental strand, 6660129 - 6659817
Alignment:
| Q |
55 |
gttgatcatggtttgaccctccgaacttggaccaatgttgccggcgataaatctaaagggaagttatatggagctggtaacttagctgtcaactaccaga |
154 |
Q |
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||||||||| ||||| |||||| || ||||||||| ||||| ||||||||| | ||||| || |||||||| || |||||||| || | ||||||| || |
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| T |
6660129 |
gttgatcatagtttggccctccaaatttggaccaaagttgctggcgataaaaccaaaggaaaattatatggtgccggtaacttggccgctaactaccgga |
6660030 |
T |
|
| Q |
155 |
agggaattgca-catccctcaagctcaccctgaatcatggtgaggggtcctcacaccagcctgagatgacccatgaaatgcgcgagctgattcaaaaatt |
253 |
Q |
| |
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| T |
6660029 |
agggtgttgcaacaaccctcagatttacccttaatcatggcgaaggatcctcccagcagcctgcactgacccctgagatgcgtgaccttattcaaagatt |
6659930 |
T |
|
| Q |
254 |
gacacaagagcagctcatacaacaaatggcgagtcaggaggctcttgtgcaaaaattgctt------gaacgaaaatatgaggagcaattggcccaattt |
347 |
Q |
| |
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||| ||||||||||||| || ||||||||||| || ||||| |||| ||| | |||||| |||||| |||||||||||||||||| |||||| |
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| T |
6659929 |
gactcaagagcagctcacccagcaaatggcgagacatgaggccgttgtacaagatttgcttagccgccaacgaacatatgaggagcaattggctcaattt |
6659830 |
T |
|
| Q |
348 |
aagcaagcacatg |
360 |
Q |
| |
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||||||||||| |
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| T |
6659829 |
cggcaagcacatg |
6659817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 55 - 295
Target Start/End: Complemental strand, 7781952 - 7781711
Alignment:
| Q |
55 |
gttgatcatggtttgaccctccgaacttggaccaatgttgccggcgataaatctaaagggaagttatatggagctggtaacttagctgtcaactaccaga |
154 |
Q |
| |
|
||||||||| ||||| |||||| | | |||||||| ||||| ||||||||| | ||||| || |||||||| || |||||||| || | ||||||| || |
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| T |
7781952 |
gttgatcatagtttggccctccaaccatggaccaaagttgctggcgataaaaccaaaggaaaattatatggtgccggtaacttggccgctaactacctga |
7781853 |
T |
|
| Q |
155 |
agggaattgca-catccctcaagctcaccctgaatcatggtgaggggtcctcacaccagcctgagatgacccatgaaatgcgcgagctgattcaaaaatt |
253 |
Q |
| |
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|||| ||||| || |||||| | ||||| ||||||||||| || ||||| || ||||||| | |||||| ||| ||||| || || ||||||| ||| |
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| T |
7781852 |
agggtgttgcaacaaccctcagatttacccttaatcatggtgaaggatcctcccagcagcctgcgctgacccctgagatgcgtgaccttattcaaagatt |
7781753 |
T |
|
| Q |
254 |
gacacaagagcagctcatacaacaaatggcgagtcaggaggc |
295 |
Q |
| |
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||| ||||||||||||| || ||||||||||| || ||||| |
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| T |
7781752 |
gactcaagagcagctcacccagcaaatggcgagacacgaggc |
7781711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 7430576 - 7430451
Alignment:
| Q |
180 |
accctgaatcatggtgaggggtcctcacaccagcctgagatgacccatgaaatgcgcgagctgattcaaaaattgacacaagagcagctcatacaacaaa |
279 |
Q |
| |
|
||||| ||||||||||| || |||| || ||||||||| |||| | || ||||| ||||| ||||| | |||||||||||||||| ||| || || | |
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| T |
7430576 |
accctcaatcatggtgaaggaacctcccagcagcctgagctgacgccagagatgcgggagcttattcatagattgacacaagagcagttcacgcagcaga |
7430477 |
T |
|
| Q |
280 |
tggcgagtcaggaggctcttgtgcaa |
305 |
Q |
| |
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|||||||||| | ||| ||||||||| |
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| T |
7430476 |
tggcgagtcaagcggcccttgtgcaa |
7430451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 6052679 - 6052593
Alignment:
| Q |
180 |
accctgaatcatggtgaggggtcctcacaccagcctgagatgacccatgaaatgcgcgagctgattcaaaaattgacacaagagcag |
266 |
Q |
| |
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||||| ||||||||||| || | ||| || ||||||||| |||||| || ||||| ||||| ||||| | |||||||||||||||| |
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| T |
6052679 |
accctcaatcatggtgaaggattctcccagcagcctgagctgaccccagagatgcgggagcttattcatagattgacacaagagcag |
6052593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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