View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_low_15 (Length: 429)

Name: NF8186_low_15
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_low_15
NF8186_low_15
[»] chr5 (17 HSPs)
chr5 (173-329)||(41154994-41155149)
chr5 (58-174)||(39030555-39030682)
chr5 (368-426)||(41154942-41155000)
chr5 (16-59)||(41155148-41155191)
chr5 (101-169)||(38958058-38958130)
chr5 (101-168)||(33669968-33670039)
chr5 (64-169)||(39030560-39030676)
chr5 (112-169)||(34252714-34252775)
chr5 (58-139)||(2424429-2424517)
chr5 (103-144)||(26730097-26730138)
chr5 (57-161)||(42324870-42324985)
chr5 (103-142)||(26835273-26835312)
chr5 (104-168)||(42708580-42708648)
chr5 (112-169)||(9956550-9956611)
chr5 (56-88)||(13146608-13146640)
chr5 (101-174)||(33498353-33498430)
chr5 (57-97)||(34252707-34252747)
[»] chr1 (9 HSPs)
chr1 (58-174)||(3739805-3739932)
chr1 (66-164)||(29855060-29855169)
chr1 (64-169)||(3739811-3739927)
chr1 (101-174)||(19758312-19758389)
chr1 (101-169)||(30693332-30693404)
chr1 (64-97)||(19758351-19758384)
chr1 (101-142)||(47543627-47543668)
chr1 (56-88)||(25990626-25990658)
chr1 (56-88)||(46949198-46949230)
[»] chr2 (14 HSPs)
chr2 (65-174)||(31469063-31469183)
chr2 (109-169)||(10459263-10459327)
chr2 (101-169)||(17437167-17437239)
chr2 (101-144)||(43398879-43398922)
chr2 (57-161)||(944776-944891)
chr2 (57-97)||(2884246-2884286)
chr2 (64-168)||(31469068-31469183)
chr2 (101-139)||(19924335-19924373)
chr2 (108-142)||(35311232-35311266)
chr2 (58-88)||(38549890-38549920)
chr2 (101-168)||(38935404-38935475)
chr2 (102-168)||(2884254-2884324)
chr2 (57-97)||(10459256-10459296)
chr2 (56-88)||(21539634-21539666)
[»] chr7 (10 HSPs)
chr7 (101-170)||(6803303-6803376)
chr7 (57-156)||(16866391-16866501)
chr7 (101-142)||(44816495-44816536)
chr7 (101-165)||(5026141-5026209)
chr7 (56-88)||(18206514-18206546)
chr7 (244-280)||(36914750-36914786)
chr7 (58-96)||(1554916-1554954)
chr7 (60-97)||(27147590-27147627)
chr7 (56-88)||(34515823-34515855)
chr7 (56-88)||(35181068-35181100)
[»] chr4 (14 HSPs)
chr4 (101-166)||(55827282-55827351)
chr4 (101-169)||(55762905-55762977)
chr4 (101-142)||(54235263-54235304)
chr4 (98-159)||(39973988-39974050)
chr4 (98-158)||(39978339-39978400)
chr4 (67-165)||(54009984-54010092)
chr4 (121-168)||(2734177-2734228)
chr4 (56-89)||(38940743-38940776)
chr4 (56-88)||(3043381-3043413)
chr4 (101-141)||(3249714-3249754)
chr4 (102-134)||(5496893-5496925)
chr4 (63-95)||(12276816-12276848)
chr4 (108-144)||(18995179-18995215)
chr4 (56-88)||(52712937-52712969)
[»] chr3 (8 HSPs)
chr3 (101-161)||(32221511-32221575)
chr3 (56-161)||(26439322-26439429)
chr3 (56-97)||(46829122-46829163)
chr3 (101-160)||(31280161-31280224)
chr3 (55-88)||(2927152-2927185)
chr3 (121-174)||(46829041-46829098)
chr3 (65-97)||(46829047-46829079)
chr3 (56-88)||(52251961-52251993)
[»] scaffold0126 (1 HSPs)
scaffold0126 (103-145)||(28192-28234)
[»] chr6 (11 HSPs)
chr6 (101-164)||(28004664-28004731)
chr6 (101-163)||(31323817-31323883)
chr6 (101-166)||(9829891-9829960)
chr6 (56-96)||(14446777-14446817)
chr6 (59-97)||(7343321-7343359)
chr6 (101-168)||(8437815-8437886)
chr6 (58-92)||(9675840-9675874)
chr6 (57-95)||(34553120-34553158)
chr6 (56-88)||(31887370-31887402)
chr6 (101-145)||(33822313-33822357)
chr6 (65-93)||(35003757-35003785)
[»] scaffold0097 (1 HSPs)
scaffold0097 (101-142)||(37939-37980)
[»] chr8 (4 HSPs)
chr8 (244-280)||(11168063-11168099)
chr8 (55-88)||(11992606-11992639)
chr8 (109-142)||(13209992-13210025)
chr8 (101-166)||(29111000-29111069)
[»] scaffold0027 (1 HSPs)
scaffold0027 (108-142)||(13202-13236)
[»] scaffold2113 (1 HSPs)
scaffold2113 (102-164)||(618-684)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 5e-63; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 173 - 329
Target Start/End: Complemental strand, 41155149 - 41154994
Alignment:
Q  173 taatgcttttgcctacaaacataaattcaaaatttttatttttactttcatgcacactt-gcacatctcctcccaatacagcattgctaaatacactaaa 271  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||| || ||||||||| |||||||| |||||||||||||||||||||    
T  41155149 taatgcttttgcctacaaacataaattcaa--tttttatttttactttcatgcacaatttgcacatctcttcccaataaagcattgctaaatacactaaa 41155052  T
Q  272 aagaacgtatcacgaaaagattgcaaataaaaatcaccaatgaaaaattagagtgttg 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41155051 aagaacgtatcacgaaaagattgcaaataaaaatcaccaatgaaaaattagaatgttg 41154994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 58 - 174
Target Start/End: Complemental strand, 39030682 - 39030555
Alignment:
Q  58 tactccctccgtcctaaaatataagtaaaaattggtcaacgaa-------gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatt 146  Q
    |||||||||| ||| |||||||||| ||||||| |||||| ||       ||||||||||||||||||||||||||||||||||||||||||    ||||    
T  39030682 tactccctccatcccaaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatt 39030583  T
Q  147 tttgcttatattttgggacggagtagta 174  Q
    |||||||||||||| | |||||||||||    
T  39030582 tttgcttatattttagaacggagtagta 39030555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 426
Target Start/End: Complemental strand, 41155000 - 41154942
Alignment:
Q  368 aatgttgaatggttggctgagatgcatgtggcaatgggattcatgatgtccatctcatt 426  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  41155000 aatgttgaatggttggctgagatgcatgttgcaatgggattcatgatgtcattctcatt 41154942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 41155191 - 41155148
Alignment:
Q  16 gttcattggcttaaatttaacttgatgtcaagtcatccagtata 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41155191 gttcattggcttaaatttaacttgatgtcaagtcatccagtata 41155148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 38958130 - 38958058
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggacggag 169  Q
    |||||||||||||| ||| |||||||||||||||||||||||    ||||||| |||||||||||| ||||||    
T  38958130 gtatttggtacaaaatttgaaccaaatacattaacttttgttaatcaatttttacttatattttggaacggag 38958058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 33669968 - 33670039
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggacgga 168  Q
    |||| ||||||||||||| |||||||||||||||||||| ||    |||||||||||| |||||||||||||    
T  33669968 gtatctggtacaaattttaaaccaaatacattaactttttttgaccaatttttgcttacattttgggacgga 33670039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 39030560 - 39030676
Alignment:
Q  64 ctccgtcctaaaatataagtaaaaattggtcaacgaa-------gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgct 152  Q
    |||||| |||||||||||| |||||||||||||| ||       |||||||||  ||| |||  ||||||||||||||||||||||    ||||||||||    
T  39030560 ctccgttctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgct 39030659  T
Q  153 tatattttgggacggag 169  Q
    |||||||||||| ||||    
T  39030660 tatattttgggatggag 39030676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 34252775 - 34252714
Alignment:
Q  112 aaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggacggag 169  Q
    ||||||| |||||||||||||||||||||||    |||||||||||| ||||||||||||||    
T  34252775 aaattttgaaccaaatacattaacttttgttgaccaatttttgcttacattttgggacggag 34252714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 2424429 - 2424517
Alignment:
Q  58 tactccctccgtcctaaaatataagtaaaaattggtcaac-------gaagtatttggtacaaatttttaaccaaatacattaactttt 139  Q
    |||||||||||| |||||||||||| ||||||| || |||       || |||| ||||||||||||| ||||||||||||||||||||    
T  2424429 tactccctccgtgctaaaatataagcaaaaatttgttaacataagctgatgtatatggtacaaattttgaaccaaatacattaactttt 2424517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 26730097 - 26730138
Alignment:
Q  103 atttggtacaaatttttaaccaaatacattaacttttgttaa 144  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  26730097 atttgatacaaatttttaatcaaatacattaacttttgttaa 26730138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 42324870 - 42324985
Alignment:
Q  57 atactccctccgtcctaaaatataagtaaaaattggtcaac-------gaagtatttggtacaaatttttaaccaaatacattaacttttgtt----aat 145  Q
    |||||||||| || ||||||||||| | ||||||||||||        || |||||||||| ||||||| || ||||||||||||||||||||    |||    
T  42324870 atactccctcagtgctaaaatataaattaaaattggtcaatataaattgatgtatttggtataaattttaaaacaaatacattaacttttgttgaccaat 42324969  T
Q  146 ttttgcttatattttg 161  Q
    |||| |||||||||||    
T  42324970 ttttacttatattttg 42324985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 26835273 - 26835312
Alignment:
Q  103 atttggtacaaatttttaaccaaatacattaacttttgtt 142  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  26835273 atttgatacaaatttttaaccaaatatattaacttttgtt 26835312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 42708648 - 42708580
Alignment:
Q  104 tttggtacaaatttttaaccaaatacattaacttttg----ttaatttttgcttatattttgggacgga 168  Q
    ||||||| ||||||| ||| |||||||||||||||||    ||||||||||| |||||||| |||||||    
T  42708648 tttggtataaattttcaactaaatacattaacttttgttgattaatttttgcgtatattttaggacgga 42708580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 9956550 - 9956611
Alignment:
Q  112 aaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggacggag 169  Q
    ||||||| || ||||||||||||||||||||    ||||||| |||| ||||||||||||||    
T  9956550 aaattttgaatcaaatacattaacttttgttaaccaatttttacttacattttgggacggag 9956611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 13146608 - 13146640
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaa 88  Q
    ||||||||||||||||||||||||||| |||||    
T  13146608 tatactccctccgtcctaaaatataagcaaaaa 13146640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 33498430 - 33498353
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggacggagtagta 174  Q
    |||||| ||||||||||| ||||||||| ||| | |||||||    || ||||||||||||||| |||||||| ||||    
T  33498430 gtattttgtacaaattttgaaccaaatatattgatttttgttggccaacttttgcttatattttaggacggaggagta 33498353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 34252707 - 34252747
Alignment:
Q  57 atactccctccgtcctaaaatataagtaaaaattggtcaac 97  Q
    ||||||||||||||| ||||| |||| ||||||||||||||    
T  34252707 atactccctccgtcccaaaatgtaagcaaaaattggtcaac 34252747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 3739805 - 3739932
Alignment:
Q  58 tactccctccgtcctaaaatataagtaaaaattggtcaacgaa-------gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatt 146  Q
    |||||||||||||| |||||||||| |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    ||||    
T  3739805 tactccctccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatt 3739904  T
Q  147 tttgcttatattttgggacggagtagta 174  Q
    |||||||||||||| |||||||||||||    
T  3739905 tttgcttatattttaggacggagtagta 3739932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 29855169 - 29855060
Alignment:
Q  66 ccgtcctaaaatataagtaaaaattggtcaacgaa-------gtatttggtacaaatttttaaccaaatacattaacttttg----ttaatttttgctta 154  Q
    ||||||||||||||||| |||||||| ||||| ||       |||||| |||||||||||||||||||||||| ||||||||    |||||||| |||||    
T  29855169 ccgtcctaaaatataagcaaaaattgatcaacaaaagttaatgtatttcgtacaaatttttaaccaaatacatcaacttttgttgattaattttcgctta 29855070  T
Q  155 tattttggga 164  Q
    ||||||||||    
T  29855069 tattttggga 29855060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 3739927 - 3739811
Alignment:
Q  64 ctccgtcctaaaatataagtaaaaattggtcaacgaa-------gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgct 152  Q
    ||||||||||||||||||| |||||||||||||| ||       |||||||||  ||| |||  |||||||||||||||||| |||    ||||||||||    
T  3739927 ctccgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgct 3739828  T
Q  153 tatattttgggacggag 169  Q
    |||||||||||||||||    
T  3739827 tatattttgggacggag 3739811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 19758312 - 19758389
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggacggagtagta 174  Q
    |||||||||||||||| | ||| |||||||||||||||||||    ||||||| ||||||||||  ||||||| ||||    
T  19758312 gtatttggtacaaattataaactaaatacattaacttttgttgaccaatttttacttatattttatgacggagaagta 19758389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 30693404 - 30693332
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggacggag 169  Q
    |||||||||||||||||| || |||||||||||| |||||||    |||||||  ||||||||| ||||||||    
T  30693404 gtatttggtacaaattttgaatcaaatacattaatttttgttgatcaatttttatttatattttcggacggag 30693332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 19758384 - 19758351
Alignment:
Q  64 ctccgtcctaaaatataagtaaaaattggtcaac 97  Q
    ||||||| ||||||||||||||||||||||||||    
T  19758384 ctccgtcataaaatataagtaaaaattggtcaac 19758351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 47543668 - 47543627
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt 142  Q
    |||||||||||||||||| |||||||| |||||| |||||||    
T  47543668 gtatttggtacaaattttgaaccaaattcattaatttttgtt 47543627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 25990626 - 25990658
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaa 88  Q
    ||||||||||||||||||||||||||| |||||    
T  25990626 tatactccctccgtcctaaaatataagcaaaaa 25990658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 46949198 - 46949230
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaa 88  Q
    ||||||||||||||||||||||||||| |||||    
T  46949198 tatactccctccgtcctaaaatataagcaaaaa 46949230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 31469183 - 31469063
Alignment:
Q  65 tccgtcctaaaatataagtaaaaattggtcaacgaa-------gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgctt 153  Q
    ||||||| |||||||||| |||||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||    |||||||||||    
T  31469183 tccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgctt 31469084  T
Q  154 atattttgggacggagtagta 174  Q
    |||||||||||||||||||||    
T  31469083 atattttgggacggagtagta 31469063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 10459327 - 10459263
Alignment:
Q  109 tacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggacggag 169  Q
    |||||||||| |||||||||||||||||||||||    |||||||||||||||||||||| ||||    
T  10459327 tacaaattttgaaccaaatacattaacttttgttgaccaatttttgcttatattttgggaaggag 10459263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 17437167 - 17437239
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggacggag 169  Q
    |||||||||||||||||| ||| ||||||||||| |||||||    |||||||| ||||||||||||||||||    
T  17437167 gtatttggtacaaattttgaactaaatacattaatttttgttgacaaatttttgtttatattttgggacggag 17437239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 43398879 - 43398922
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgttaa 144  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  43398879 gtatttggtacaaattttgaaccaaatacattaacttttgttaa 43398922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 944891 - 944776
Alignment:
Q  57 atactccctccgtcctaaaatataagtaaaaattggtcaac-------gaagtatttggtacaaatttttaaccaaatacattaacttttgtt----aat 145  Q
    ||||||||||||||  ||||| |||||||||||| ||||||       || |||||||||||||||||| ||| |||||||||||||||| ||     ||    
T  944891 atactccctccgtctcaaaatgtaagtaaaaattagtcaacataagttgatgtatttggtacaaattttgaactaaatacattaacttttattgatcgat 944792  T
Q  146 ttttgcttatattttg 161  Q
    ||||||||||||||||    
T  944791 ttttgcttatattttg 944776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 2884246 - 2884286
Alignment:
Q  57 atactccctccgtcctaaaatataagtaaaaattggtcaac 97  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  2884246 atactccatccgtcctaaaatataagtaaaaatttgtcaac 2884286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 31469068 - 31469183
Alignment:
Q  64 ctccgtcctaaaatataagtaaaaattggtcaacgaa-------gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgct 152  Q
    |||||||| |||||||||| |||||||||||||| ||       |||||||||  ||| |||  | |||||||||||||||| |||    ||||||||||    
T  31469068 ctccgtcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgct 31469167  T
Q  153 tatattttgggacgga 168  Q
    ||||||||||||||||    
T  31469168 tatattttgggacgga 31469183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 19924373 - 19924335
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaactttt 139  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  19924373 gtatttggtacaaattttgaaccatatacattaactttt 19924335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 35311232 - 35311266
Alignment:
Q  108 gtacaaatttttaaccaaatacattaacttttgtt 142  Q
    ||||||||||| |||||||||||||||||||||||    
T  35311232 gtacaaattttgaaccaaatacattaacttttgtt 35311266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 88
Target Start/End: Complemental strand, 38549920 - 38549890
Alignment:
Q  58 tactccctccgtcctaaaatataagtaaaaa 88  Q
    |||||||||||||||||||||||||||||||    
T  38549920 tactccctccgtcctaaaatataagtaaaaa 38549890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 38935404 - 38935475
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgt----taatttttgcttatattttgggacgga 168  Q
    ||||||| |||| ||||| ||| ||||||||||||||||||    ||||||||| ||||||||| |||||||    
T  38935404 gtatttgatacagattttgaacaaaatacattaacttttgttgagtaatttttgtttatatttttggacgga 38935475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 2884324 - 2884254
Alignment:
Q  102 tatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggacgga 168  Q
    |||||| || ||||||| ||||||||||||||| |||||||    ||||||| |||||||||| |||||||    
T  2884324 tatttgatataaattttgaaccaaatacattaatttttgttgacaaatttttacttatattttaggacgga 2884254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 10459256 - 10459296
Alignment:
Q  57 atactccctccgtcctaaaatataagtaaaaattggtcaac 97  Q
    ||||||||||| ||| |||||||||| ||||||||||||||    
T  10459256 atactccctccttcccaaaatataagcaaaaattggtcaac 10459296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 21539634 - 21539666
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaa 88  Q
    ||||||||||||||||||||||||||| |||||    
T  21539634 tatactccctccgtcctaaaatataagcaaaaa 21539666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 6803376 - 6803303
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggacggagt 170  Q
    |||||||||||||||||| ||| |||||||||||||||||||    || |||||||||||||||||||| ||||    
T  6803376 gtatttggtacaaattttaaactaaatacattaacttttgttgaccaaattttgcttatattttgggacagagt 6803303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 16866391 - 16866501
Alignment:
Q  57 atactccctccgtcctaaaatataagtaaaaattggtcaacgaa-------gtatttggtacaaatttttaaccaaatacattaacttttgtt----aat 145  Q
    ||||||||||| ||| |||||||||| |||||||| ||||  ||       ||||| ||||||||||||||||||||||||||||||||||||    |||    
T  16866391 atactccctccatcccaaaatataagcaaaaattgatcaataaaagttaatgtattaggtacaaatttttaaccaaatacattaacttttgttgaccaat 16866490  T
Q  146 ttttgcttata 156  Q
    |||||||||||    
T  16866491 ttttgcttata 16866501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 44816536 - 44816495
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt 142  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  44816536 gtatttggtacaaattttgaaccaaatacattaacttttgtt 44816495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 5026209 - 5026141
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggac 165  Q
    ||||||||||||||||||  || ||||| |||||||||||||    |||||||||||||||||||||||    
T  5026209 gtatttggtacaaattttggactaaatatattaacttttgttaaccaatttttgcttatattttgggac 5026141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 18206546 - 18206514
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaa 88  Q
    |||||||||||||||||||||||||||||||||    
T  18206546 tatactccctccgtcctaaaatataagtaaaaa 18206514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 36914750 - 36914786
Alignment:
Q  244 ccaatacagcattgctaaatacactaaaaagaacgta 280  Q
    |||||| ||||||||||||||||||||||||||||||    
T  36914750 ccaataaagcattgctaaatacactaaaaagaacgta 36914786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 1554954 - 1554916
Alignment:
Q  58 tactccctccgtcctaaaatataagtaaaaattggtcaa 96  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  1554954 tactccctccgtcctaaaatataaacaaaaattggtcaa 1554916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 27147590 - 27147627
Alignment:
Q  60 ctccctccgtcctaaaatataagtaaaaattggtcaac 97  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  27147590 ctccctccgttctaaaatataagtaaaaattagtcaac 27147627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 34515823 - 34515855
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaa 88  Q
    ||||||||||||||||||||||||||| |||||    
T  34515823 tatactccctccgtcctaaaatataagcaaaaa 34515855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 35181068 - 35181100
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaa 88  Q
    ||||||||||||||||||||||||||| |||||    
T  35181068 tatactccctccgtcctaaaatataagcaaaaa 35181100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 55827282 - 55827351
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggacg 166  Q
    ||||||| |||||| ||||||||||||| |||||||||||||    ||||||||||||||||||||||||    
T  55827282 gtatttgctacaaaattttaaccaaatatattaacttttgttgaccaatttttgcttatattttgggacg 55827351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 55762905 - 55762977
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggacggag 169  Q
    ||||||| ||||||||||||| |||||| |||||||||||||    |||||||| ||||||||||||||||||    
T  55762905 gtatttgctacaaatttttaatcaaatatattaacttttgttgaccaatttttgtttatattttgggacggag 55762977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 54235263 - 54235304
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt 142  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  54235263 gtatttagtacaaattttgaaccaaatacattaacttttgtt 54235304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 39973988 - 39974050
Alignment:
Q  98 gaagtatttggtacaaatttttaaccaaatacattaacttttgttaa--tttttgcttatattt 159  Q
    |||||||||||| ||||||||||| |||||||||||| |||| ||||  |||||||||||||||    
T  39973988 gaagtatttggttcaaatttttaatcaaatacattaa-ttttattaacttttttgcttatattt 39974050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 39978339 - 39978400
Alignment:
Q  98 gaagtatttggtacaaatttttaaccaaatacattaacttttgttaa--tttttgcttatatt 158  Q
    |||||||||||| ||||||||||| |||||||||||| |||| ||||  ||||||||||||||    
T  39978339 gaagtatttggttcaaatttttaatcaaatacattaa-ttttattaacttttttgcttatatt 39978400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 54009984 - 54010092
Alignment:
Q  67 cgtcctaaaatataagtaaaaattggtcaacg-aagt-----atttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttata 156  Q
    ||||| |||||||||| ||||||||||||||  ||||     |||||||| ||||||| || |||||||||||| |||||||    ||||||||||||||    
T  54009984 cgtcccaaaatataagcaaaaattggtcaacataagtgttctatttggtataaattttgaatcaaatacattaagttttgtttataaatttttgcttata 54010083  T
Q  157 ttttgggac 165  Q
    || ||||||    
T  54010084 ttgtgggac 54010092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 2734228 - 2734177
Alignment:
Q  121 accaaatacattaacttttgtt----aatttttgcttatattttgggacgga 168  Q
    ||||||||||||||||||||||    ||||||| ||||||||||||||||||    
T  2734228 accaaatacattaacttttgttgactaatttttacttatattttgggacgga 2734177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 38940743 - 38940776
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaat 89  Q
    ||||||||||||||||||||||||||| ||||||    
T  38940743 tatactccctccgtcctaaaatataagcaaaaat 38940776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 3043413 - 3043381
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaa 88  Q
    ||||||||||||||||||||||||||| |||||    
T  3043413 tatactccctccgtcctaaaatataagcaaaaa 3043381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 3249754 - 3249714
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgt 141  Q
    |||| ||||| ||||||| ||||||||||||||||||||||    
T  3249754 gtatctggtataaattttgaaccaaatacattaacttttgt 3249714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 5496893 - 5496925
Alignment:
Q  102 tatttggtacaaatttttaaccaaatacattaa 134  Q
    ||||||||||||||||| |||||||||||||||    
T  5496893 tatttggtacaaattttgaaccaaatacattaa 5496925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 12276816 - 12276848
Alignment:
Q  63 cctccgtcctaaaatataagtaaaaattggtca 95  Q
    |||||||||||||||||||||||| ||||||||    
T  12276816 cctccgtcctaaaatataagtaaagattggtca 12276848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 18995179 - 18995215
Alignment:
Q  108 gtacaaatttttaaccaaatacattaacttttgttaa 144  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  18995179 gtacaaattttgaaccaaatacattaacttttattaa 18995215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 52712937 - 52712969
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaa 88  Q
    ||||||||||||||||||||||||||| |||||    
T  52712937 tatactccctccgtcctaaaatataagcaaaaa 52712969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 32221511 - 32221575
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgt----taatttttgcttatattttg 161  Q
    |||||||||||||||||| ||||||||||||||||||||||    ||||||||||||| ||||||    
T  32221511 gtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgcttacattttg 32221575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 26439429 - 26439322
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaattggtcaacgaagtatttggtacaaatttttaaccaaatacattaactttt---gttaatttttgct 152  Q
    |||||||||| ||||| |||||||||  |||||| ||||||| | ||||||| |||||||||| || |||||||||||| ||||   | |||| ||||||    
T  26439429 tatactcccttcgtcccaaaatataaagaaaaatgggtcaac-atgtatttgatacaaattttgaatcaaatacattaatttttttggctaatatttgct 26439331  T
Q  153 tatattttg 161  Q
    |||||||||    
T  26439330 tatattttg 26439322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 46829163 - 46829122
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaattggtcaac 97  Q
    |||||||||| |||||||||||||||| ||||||||||||||    
T  46829163 tatactcccttcgtcctaaaatataagcaaaaattggtcaac 46829122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 31280224 - 31280161
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatatttt 160  Q
    |||| ||||||||||||| ||||||||||||||| |||||||    ||||||| ||||||||||    
T  31280224 gtatatggtacaaattttgaaccaaatacattaaattttgttgatcaatttttacttatatttt 31280161  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 2927152 - 2927185
Alignment:
Q  55 gtatactccctccgtcctaaaatataagtaaaaa 88  Q
    |||||||||||||||||| |||||||||||||||    
T  2927152 gtatactccctccgtcctgaaatataagtaaaaa 2927185  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 46829098 - 46829041
Alignment:
Q  121 accaaatacattaacttttgtt----aatttttgcttatattttgggacggagtagta 174  Q
    |||||||||||| |||||||||    |||||||||||||||||| ||||||| |||||    
T  46829098 accaaatacattgacttttgttgaccaatttttgcttatattttaggacggaatagta 46829041  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 46829047 - 46829079
Alignment:
Q  65 tccgtcctaaaatataagtaaaaattggtcaac 97  Q
    |||||||||||||||||| ||||||||||||||    
T  46829047 tccgtcctaaaatataagcaaaaattggtcaac 46829079  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 52251961 - 52251993
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaa 88  Q
    ||||||||||||||||||||||||||| |||||    
T  52251961 tatactccctccgtcctaaaatataagcaaaaa 52251993  T

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Target: scaffold0126 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 28234 - 28192
Alignment:
Q  103 atttggtacaaatttttaaccaaatacattaacttttgttaat 145  Q
    ||||||||| |||||| ||||||||||||||||||||||||||    
T  28234 atttggtacgaattttgaaccaaatacattaacttttgttaat 28192  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 28004664 - 28004731
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgt----taatttttgcttatattttggga 164  Q
    |||||||||||||||||| | ||||||||||||||||||||    |||||||  ||||||||||||||    
T  28004664 gtatttggtacaaattttgagccaaatacattaacttttgttgactaattttcccttatattttggga 28004731  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 31323883 - 31323817
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttggg 163  Q
    |||| ||||||||||||| ||| |||||||||||||||||||    |||||||||||| ||||||||    
T  31323883 gtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatttttgcttacattttggg 31323817  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 9829960 - 9829891
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgt----taatttttgcttatattttgggacg 166  Q
    |||||||||||||||||| ||| ||||||||||| ||||||    |||||||| ||||||||| ||||||    
T  9829960 gtatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatatttagggacg 9829891  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 14446817 - 14446777
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaattggtcaa 96  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  14446817 tatactccctccgtcccaaaatgtaagtaaaaattggtcaa 14446777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 7343359 - 7343321
Alignment:
Q  59 actccctccgtcctaaaatataagtaaaaattggtcaac 97  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  7343359 actctctccgtcctaaaatataagtaaaaattgatcaac 7343321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 8437815 - 8437886
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgt----taatttttgcttatattttgggacgga 168  Q
    |||||||||||||||||| || |||||||||||| ||||||    ||| |||| ||||||||||| ||||||    
T  8437815 gtatttggtacaaattttgaatcaaatacattaatttttgttgactaaattttacttatattttgagacgga 8437886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 92
Target Start/End: Complemental strand, 9675874 - 9675840
Alignment:
Q  58 tactccctccgtcctaaaatataagtaaaaattgg 92  Q
    |||||| ||||||||||||||||||||||||||||    
T  9675874 tactccatccgtcctaaaatataagtaaaaattgg 9675840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 34553120 - 34553158
Alignment:
Q  57 atactccctccgtcctaaaatataagtaaaaattggtca 95  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  34553120 atactccctcggtcctaaaatgtaagtaaaaattggtca 34553158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 31887402 - 31887370
Alignment:
Q  56 tatactccctccgtcctaaaatataagtaaaaa 88  Q
    ||||||||||||||||||||||||||| |||||    
T  31887402 tatactccctccgtcctaaaatataagcaaaaa 31887370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 33822357 - 33822313
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgttaat 145  Q
    ||||||| |||||||||| ||| ||||| ||||||||||||||||    
T  33822357 gtatttgatacaaattttgaactaaatatattaacttttgttaat 33822313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 35003757 - 35003785
Alignment:
Q  65 tccgtcctaaaatataagtaaaaattggt 93  Q
    |||||||||||||||||||||||||||||    
T  35003757 tccgtcctaaaatataagtaaaaattggt 35003785  T

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Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 37980 - 37939
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt 142  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  37980 gtatttggtataaattttaaaccaaatacattaacttttgtt 37939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 11168063 - 11168099
Alignment:
Q  244 ccaatacagcattgctaaatacactaaaaagaacgta 280  Q
    |||||| ||||||||||||||||||||||||||||||    
T  11168063 ccaataaagcattgctaaatacactaaaaagaacgta 11168099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 11992606 - 11992639
Alignment:
Q  55 gtatactccctccgtcctaaaatataagtaaaaa 88  Q
    |||||||||||||||||||||||||||| |||||    
T  11992606 gtatactccctccgtcctaaaatataagcaaaaa 11992639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 13210025 - 13209992
Alignment:
Q  109 tacaaatttttaaccaaatacattaacttttgtt 142  Q
    |||||||||| |||||||||||||||||||||||    
T  13210025 tacaaattttgaaccaaatacattaacttttgtt 13209992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 29111000 - 29111069
Alignment:
Q  101 gtatttggtacaaatttttaaccaaatacattaacttttgtt----aatttttgcttatattttgggacg 166  Q
    |||||||||| ||||||| ||||||||||||||| ||| |||    |||||||| |||||||||| ||||    
T  29111000 gtatttggtataaattttgaaccaaatacattaagtttcgttgatcaatttttgtttatattttgagacg 29111069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 142
Target Start/End: Complemental strand, 13236 - 13202
Alignment:
Q  108 gtacaaatttttaaccaaatacattaacttttgtt 142  Q
    ||||||||||| |||||||||||||||||||||||    
T  13236 gtacaaattttaaaccaaatacattaacttttgtt 13202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 618 - 684
Alignment:
Q  102 tatttggtacaaatttttaaccaaatacattaacttttgt----taatttttgcttatattttggga 164  Q
    ||||||||||||||||| ||| ||||||| ||||||||||    |||||||  ||||||||||||||    
T  618 tatttggtacaaattttgaactaaatacaataacttttgttgactaattttcacttatattttggga 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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