View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_17 (Length: 427)
Name: NF8186_low_17
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 70 - 411
Target Start/End: Original strand, 41161091 - 41161432
Alignment:
| Q |
70 |
gggaataaaagtcttgcagcactaaccatgtcaaacaaaattagcagcttctacaggttcttcctcaaatgctgtcctcaatgaagaatcttttgtggat |
169 |
Q |
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| T |
41161091 |
gggaataaaagtcttgcagcactaaccatgtcaaacaaaattagcagcttctacaggttcttcctcaaatgctgtcctcaacgaagaatcttttgtggat |
41161190 |
T |
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| Q |
170 |
tttgtaaagaattactagtaatagtataaggataaatacagtttgatctagagcatatatgaattattacttgcatctcctgtgttttatatcaagattc |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41161191 |
tttgtaaagaattactagtaatagtataaggataaatacagtttgatctagagcatatatgaattattacttgcatctcctgtgttttatatcaagattc |
41161290 |
T |
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| Q |
270 |
ctatcgtgatcatcttcatcataggtacgcacatcaattagtagtgattggattctttgtgaactgtaactgcacattttgtcaattttgatgatgcttg |
369 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41161291 |
ctatcgtgatcatcttcatcatagatacgcacatcaattagtagtgattggattctttgtgaactgtaactgcacattatgtcaattttgatgatgcttg |
41161390 |
T |
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| Q |
370 |
ttacattactctttcatcagtatatgtaaacgttgtatcttg |
411 |
Q |
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| T |
41161391 |
ttacattactcattcatcagtatatgtaaacgttgtatcttg |
41161432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 41163663 - 41163707
Alignment:
| Q |
68 |
aggggaataaaagtcttgcagcactaaccatgtcaaacaaaatta |
112 |
Q |
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| T |
41163663 |
aggggaataaaagtcctgcagcactaaccatgtcaaacaaaatta |
41163707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 41161066 - 41161095
Alignment:
| Q |
13 |
aaaatggaggaaataccaaaggatagggaa |
42 |
Q |
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| T |
41161066 |
aaaatggaggaaataccaaaggatagggaa |
41161095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 3734436 - 3734395
Alignment:
| Q |
370 |
ttacattactctttcatcagtatatgtaaacgttgtatcttg |
411 |
Q |
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| T |
3734436 |
ttacattactcattcatcagtatatgtaaatgttatatcttg |
3734395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 32656729 - 32656789
Alignment:
| Q |
9 |
gaagaaaatggaggaaataccaaaggatagggaaagaagatctcaaccaccgtttggaaag |
69 |
Q |
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|||| ||||||||||||| ||||| ||||||||||| | ||||| ||||| ||||| |||| |
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| T |
32656729 |
gaaggaaatggaggaaatcccaaaagatagggaaaggatatctccaccacagtttgcaaag |
32656789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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