View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_19 (Length: 415)
Name: NF8186_low_19
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 42205996 - 42206366
Alignment:
| Q |
1 |
gaaaacataccacaacaacaaatgatgattgttacattcnnnnnnncagagctactggagatgccaaaataaactaatatttcctttttctgattttgaa |
100 |
Q |
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| T |
42205996 |
gaaaacataccacaacaacaaatgatgattgttacattctttttttcagagctactggagatgccaaaataaactaacatttcctttttctgattttgaa |
42206095 |
T |
|
| Q |
101 |
gcttgttgatcggataacattatcatccctcaataatgtttgctcaaggggggttatggactcaggcttcgtgaagtaggtgaataggaggtagatgcca |
200 |
Q |
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| T |
42206096 |
gcttgttgatcggataacattatcatccctcaataatgtttgctcaagggcggttatggactcaggcttcgtgaagtaggtgaataggaggtagatgcca |
42206195 |
T |
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| Q |
201 |
tccatatacgtgttggtttctccttccttgtttttcttctggatgttatatgctagtggaataacacctctgttaaaaacctctacatacatgccacctc |
300 |
Q |
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| T |
42206196 |
tccatatacgtgttggtttctccttccttgtttttcttctggatgttatatgctagtggaataacacctctgttaaaaacctctacatacatgccacctc |
42206295 |
T |
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| Q |
301 |
cagcaacaagaagctgcacgaaggaaaatcgttaggattagtgttttattccaattagaaaagaacaaagc |
371 |
Q |
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| T |
42206296 |
cagcaacaagaagctgcacgaaggaaaatcgttaggattagtgttttattccaattagaaaagaacaaagc |
42206366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 415
Target Start/End: Original strand, 42206406 - 42206446
Alignment:
| Q |
375 |
gaaatgaaatgactgtgcaaagtgtttgttttgaaagaatg |
415 |
Q |
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| T |
42206406 |
gaaatgaaatgactgtgtaaagtgtttgttttgaaagaatg |
42206446 |
T |
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