View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_2 (Length: 777)
Name: NF8186_low_2
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 662; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 16 - 761
Target Start/End: Original strand, 8724961 - 8725727
Alignment:
| Q |
16 |
acttatacttgttttatatttgtttcaggttataagtggtactttgccagaaataaatatgca-----tatttgaggaacctttccaagcagacaaatac |
110 |
Q |
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| T |
8724961 |
acttatacttgttttatatttgtttcaggttttaagtggtactttgccagaaataaatatgcaatcaatatttgaggaacctttccaagcagacaaatac |
8725060 |
T |
|
| Q |
111 |
tttccctactctactcaacaatcttcaatctatgaaaatgagccggaactattattctcaaacgcacaattttacaatgcctatttaaaaaatgaaaaca |
210 |
Q |
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| T |
8725061 |
tttccctactctactcaacaatcttcaatctatgaaaatgagccggaactattattctcaaacgcacaattttacaatgcctatttcaaaaatgaaaaca |
8725160 |
T |
|
| Q |
211 |
atgttatccagagcacgtttgcaactgttgacgaggaaaataagttcgtcaattcgatgttcgttaacggggattttgttactactgaaagcagaagaca |
310 |
Q |
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| T |
8725161 |
atgttatacagagcacgtttgcaactgttgacgaggaaaataagttcgtcaattcgatgttcgttaacggggattttgttactactgaaagcagaagaca |
8725260 |
T |
|
| Q |
311 |
atcataacacaagaatataacgtggaaaactccgaagcctctctcactctctgaagtaaatatttatactacagctctcaacatgttaagacaagagtat |
410 |
Q |
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| T |
8725261 |
atcataacacaagaatataacgtggaaaactccgaagcctctctcactctctgaagtaaatatttatactacagctctcaacatgttaagacaagagtat |
8725360 |
T |
|
| Q |
411 |
gagataaaga----------------taagtgtttacgacttgtgcatattgtaaataagaatttgattatatacaacatcgacctccctcttcctttaa |
494 |
Q |
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| T |
8725361 |
gagataaagataagagtatataaacttaagtgtttccgacttgtgcatattgtaaataagaatttgattatatacaacatcgacctccctcttcctttaa |
8725460 |
T |
|
| Q |
495 |
catactcggtgatgtgagacttattctaagatgtttcattccaatcaattccaacaagtctgtttccatttgtttctgaaccatccattatggtaacatg |
594 |
Q |
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| T |
8725461 |
catactcggtaatgtgagacttgttctaagatgtttcattccaatcaattccaacaagtctgtttccatttgtttgtgaaccatccattatggtaacatg |
8725560 |
T |
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| Q |
595 |
agtgttgccacatttttgcaatgcagggtgattttattttatggattaggaataaagtacttgaatgaaatgcctaggttgaattagttttgtttgtgaa |
694 |
Q |
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| T |
8725561 |
agtgttgccacatttttgcaatgcagggtgattttcttttatggattaggaataaagtacttgaatgaaatgcctaggttgaattagttttgtttgtgaa |
8725660 |
T |
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| Q |
695 |
cttatgcatgactcataactgacagtttgatggtgaaatgtgaatctttgatttaaagggacagaga |
761 |
Q |
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| T |
8725661 |
cttatgcatgactcataactgacagtttgatggtgaaatgtgaatctttgatttaaagggacagaga |
8725727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 8744867 - 8744971
Alignment:
| Q |
78 |
atatttgaggaacctttccaagcagacaaatactttccctactctactcaacaatcttcaatctatgaaaatgagccggaactattattctcaaacgcac |
177 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| ||| |
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| T |
8744867 |
atatttgaggaaccttaccaagcagacaaatattttcccttctctactcaacaatcttcaatctatgaaaatgagcgggaagtatatttctcaaactcac |
8744966 |
T |
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| Q |
178 |
aattt |
182 |
Q |
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||||| |
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| T |
8744967 |
aattt |
8744971 |
T |
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