View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_low_3 (Length: 734)

Name: NF8186_low_3
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_low_3
NF8186_low_3
[»] chr2 (1 HSPs)
chr2 (21-728)||(44150412-44151069)


Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 21 - 728
Target Start/End: Complemental strand, 44151069 - 44150412
Alignment:
Q  21 gccctactattatctcattgagtggcgctatgctttcttgcataagatatgagttctattttatcttttatcgatcaattgaaagtggaaagtgtattgt 120  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44151069 gccctactattatctcattgagtggcactatgctttcttgcataagatatgagttctattttatcttttatcgatcaattgaaagtggaaagtgtattgt 44150970  T
Q  121 ccatgaagcttctttccaacatacataaatgttaccgataattcaaagcaaatggagaaagggattgcccctacaatagtctgccattgtataataaggg 220  Q
    |||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||    
T  44150969 ccatgaagc-------------------atgttaccgataattcaaagcaaatggagaaagggattgcccctacaata------------------aggg 44150907  T
Q  221 gcaagcataactcaaaagtctcatccccgtgttcttccctaaggagaggcaattgatggcatagtggaccctttcttattatatggcattttaaagtatc 320  Q
    ||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44150906 gcaagcataactcaaaagtctc------------ttccctaaggagaggcaattgatggcatagtggaccctttcttattatatggcattttaaagtatc 44150819  T
Q  321 ataatactgaaatttggctctcagtctcacggattcacattgacatatccttgacaaacaacaagggtttatggttagccaaagtttccatagacatggt 420  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44150818 ataatactgaaatttggctctcagtctcacggattcatattgacatatccttgacaaacaacaagggtttatggttagccaaagtttccatagacatggt 44150719  T
Q  421 gtggagagagaacaagatcaatggtaccttgtcttgccaaaaagctataaaagacatcttgcagttacttcctttgttaaaagtctagctagctagctct 520  Q
     ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |    
T  44150718 -tggagagagaacatgatcaatggtaccttgtcttgccaaaaagctataaaagacatcttgcagttacttccatcgttaaaagtctagctagctagctat 44150620  T
Q  521 ggccccgtgttgtgaaagaaaaactcttcattaattcttgttgtgaaagggcacaacttgttttccacacacgtttcaaaatttattttgtattcatata 620  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44150619 ggccccgtgttgtgaaagaaaaactcttcattaattcttgttgttaaagggcacaacttgttttccacacacgtttcaaaatttattttgtattcatata 44150520  T
Q  621 tagaataataatagaatatcattaactaaattgttttgtcaatgcatgtgaaaggtcgatctatattttctcattctccttagtaaaataaaacttcatt 720  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44150519 tagaataataatagaatatcattaactaaattgttttgtcaatgcatgtgaaaggtcgatctatattttctctttctccttagtaaaataaaacttcatt 44150420  T

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