View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_30 (Length: 365)
Name: NF8186_low_30
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 4711019 - 4710683
Alignment:
| Q |
19 |
acattaagaagtagaagggaaatttgtgtgaaacaacactagagacttgtcatgaaatagactactttgaaatggtcataatgatttagcaaaccaattc |
118 |
Q |
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| T |
4711019 |
acattaagaagtagaagggaaatttgtgtgaaacaacactagagacttgtcatgaaatagactactttgaaatggtcataatgatttagcaaaccaattc |
4710920 |
T |
|
| Q |
119 |
caaatagatctagcatacccacattcaaacataatgtgttgactcgttttcagtagccttaagacacaagctgcagattagcagccacattcaatcttga |
218 |
Q |
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| T |
4710919 |
caaatagatctagcatacccacattcaaacataatgtgttgactcgttttcagtagccttaagacacaagctgcagattagcagccacattcaatcttga |
4710820 |
T |
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| Q |
219 |
aattaatctcaaccgataatatgattcgaatctatttggtaaaaaatgttgattccggtcatgattcattatttgaatcacctaagatttttcgtttaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4710819 |
aattaatctcaaccgataatatgattcgaatctatttggtaaaaaatgttgattccagtcatgattcattatttgaatcacctaagatttttcgtttaat |
4710720 |
T |
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| Q |
319 |
atgggaactattaccacttctgatactgaggtctctg |
355 |
Q |
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| T |
4710719 |
atgggaactattaccacttctgatactgaggtctctg |
4710683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 4844936 - 4844863
Alignment:
| Q |
25 |
agaagtagaagggaaatttgtgtgaaa-caacactagagacttgtcatgaaatagactactttgaaatggtcata |
98 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4844936 |
agaagtagaagggaaatttgtgtgaaaacaacactagact-ttgtcatgaaatagactactttgaaatggtcata |
4844863 |
T |
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