View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_33 (Length: 357)
Name: NF8186_low_33
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 111 - 345
Target Start/End: Original strand, 36602121 - 36602355
Alignment:
| Q |
111 |
aatatgtgtgcgagggttgtaaaccctcgagtattgagtttcattccatttgatataaaaacaaaataagttcaaaagtgattgtcatcatgagagagtt |
210 |
Q |
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| T |
36602121 |
aatatgtgtgcgagggttgtaaaccctcgagtattgagtttgattccatttgatatgaaaacaaaataagtttaaaagtgattgtcatcatgagagagtt |
36602220 |
T |
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| Q |
211 |
caaagtatctacaaaccatgaagaacatatcctaaacttcccagtgtagacaattcgaagacaagatgcatttctccctctacacaacatccaacaagct |
310 |
Q |
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| T |
36602221 |
caaagtatctacaaaccatgaagaacgtatcctaaacttcccagtgtagacaattcgaagacaagatgcatttctccctctacacaacatccaacaagct |
36602320 |
T |
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| Q |
311 |
ttgcagtattaggatgatcaacatgagcaataact |
345 |
Q |
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| T |
36602321 |
ttgcggtattaggatgatcaacatgagcaataact |
36602355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 36601977 - 36602086
Alignment:
| Q |
1 |
ttccaagagcaactttataccttttactccaatccaatttggttttatctgaacctgaaatacatcatgagggaataagctataagtacatttaaagttg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36601977 |
ttccgagagcaactttataccttttactccaatccaatttggttttatctgaacctgaaatacatcatgagggaataagctataagtacatttaaagttg |
36602076 |
T |
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| Q |
101 |
aaagcatgtt |
110 |
Q |
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| T |
36602077 |
aaagtatgtt |
36602086 |
T |
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