View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_34 (Length: 346)
Name: NF8186_low_34
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 46975110 - 46975425
Alignment:
| Q |
15 |
ggacatcaactggtgagagaatatcatttatggtgatatctaaagttgcatgaataaatctagctccgcggctgtttttgcaatcaacgaaaacagtgta |
114 |
Q |
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| T |
46975110 |
ggacatcaactggtgagagaatatcatttatggtgatatctaaagttgcatgaataaatctagctccgcgactgtttttgcaatcaacgaaaacagtgta |
46975209 |
T |
|
| Q |
115 |
agaatgagggtcttcagattttttagtaacaagacgaccagacaggggataataatggaaaagtgtgagagaaagagagtgcttgagtttgtccaccagg |
214 |
Q |
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| T |
46975210 |
agaatgagggtcttcagattttttagtaacaagacgaccagacaggggataataatgaaaaagtgtgagagaaagagagtgtttgagtttgtccactagg |
46975309 |
T |
|
| Q |
215 |
ttctcaatgaagtggtgttggtttagtgatgatgttggtttcttgaagagaagtcccttttggatatagtgtgtagataacatggcaatatcccaatgtg |
314 |
Q |
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| T |
46975310 |
ttctcaatgaagtgttgttggtttagtgatgatgttggtttcttgaagagaagtcccttttggatatagtgtgtagataacatggcaatatcccaatgtg |
46975409 |
T |
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| Q |
315 |
ttaaataacatatttg |
330 |
Q |
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||| ||| |||||||| |
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| T |
46975410 |
ttagatagcatatttg |
46975425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 35 - 332
Target Start/End: Original strand, 46981117 - 46981417
Alignment:
| Q |
35 |
atatcatttatggtgatatctaaagttgcatgaataaatctagctccgcggctgtttttgcaatcaacgaaaacagtgtaagaatgagggtcttcagatt |
134 |
Q |
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| T |
46981117 |
atatcatttatggtgatatctaaagttgcatgaataaatttagctccgggactgtttttgcaatcgacgaaaacagtgtaagaatcaggatcttcggatt |
46981216 |
T |
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| Q |
135 |
ttttagtaacaagacgaccagacaggggataataatggaaaagtgtgagagaaagagagtgcttgagtttgtccaccaggttctcaatgaagtggtgttg |
234 |
Q |
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| T |
46981217 |
ttttagtaacaagacgacctgagaggggatagaaatggaaaagcgtgagggaaagggagtgtttcagtttctccaccaggttctctatgaaatgttgttg |
46981316 |
T |
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| Q |
235 |
gtttag---tgatgatgttggtttcttgaagagaagtcccttttggatatagtgtgtagataacatggcaatatcccaatgtgttaaataacatatttga |
331 |
Q |
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|||||| ||||||||||||||| ||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46981317 |
gtttagtgatgatgatgttggttttttgaagataagtcccttttggttataatgtgtagataacatggcaatatcccaatgtgttaaataacatatttga |
46981416 |
T |
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| Q |
332 |
t |
332 |
Q |
| |
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| T |
46981417 |
t |
46981417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 46998175 - 46998491
Alignment:
| Q |
17 |
acatcaactggtgagagaatatcatttatggtgatatctaaagttgcatgaataaatctagctccgcggctgtttttgcaatcaacgaaaacagtgtaag |
116 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |||||||||||| |
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| T |
46998175 |
acatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctccgagactgtttttgcaatcaacaaaaacagtgtaaa |
46998274 |
T |
|
| Q |
117 |
aatgagggtcttcagattttttagtaacaagacgaccagacaggggataataatggaaaagtgtgagagaaagagagtgcttgagtttgtccaccaggtt |
216 |
Q |
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| T |
46998275 |
aatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtgagggaaagggagtgtttcagtttctctaccaagtt |
46998374 |
T |
|
| Q |
217 |
ctcaatgaagtggtgttggtttag---tgatgatgttggtttcttgaagagaagtcccttttggatatagtgtgtagataacatggcaatatcccaatgt |
313 |
Q |
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||| ||||| || |||| |||||| ||||||||||||||| ||||||||||| |||||||| ||||||| || |||||||||| |||||||||| || |
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| T |
46998375 |
ctctatgaaatgttgtttgtttagtgatgatgatgttggttttttgaagagaagacccttttgaatatagtatgcagataacatgctaatatcccaaggt |
46998474 |
T |
|
| Q |
314 |
gttaaataacatatttg |
330 |
Q |
| |
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|||||| |||||||| |
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| T |
46998475 |
cctaaatagcatatttg |
46998491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 46995925 - 46996228
Alignment:
| Q |
15 |
ggacatcaactggtgagagaatatcatttatggtgatatctaaagttgcatgaataaatctagctccgcggctgtttttgcaatcaacgaaaacagtgta |
114 |
Q |
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||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| | |||||||||||||| || ||||||||||| |
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| T |
46995925 |
ggacatcaattggtgagagaatatcattgatggtaatatctaaagttgcatgaataaatttagctccgagactgtttttgcaatcgacaaaaacagtgta |
46996024 |
T |
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| Q |
115 |
agaatgagggtcttcagattttttagtaacaagacgaccagacaggggataataatggaaaagtgtgagagaaagagagtgcttgagtttgtccaccagg |
214 |
Q |
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||||||||| ||||| ||||||||||||||||||||||| || |||||||| |||||||||||||||| ||||| ||||| ||||||||| |
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| T |
46996025 |
agaatgaggatcttcggattttttagtaacaagacgacctgagaggggatagaaatggaaaagtgtgagggaaagggagtgtttgagtttg--------- |
46996115 |
T |
|
| Q |
215 |
ttctcaatgaagtggtgttggtttagtgatgatgttggtttcttgaagagaagtcccttttggatatagtgtgtagataacatggcaatatcccaatgtg |
314 |
Q |
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|||||||| || ||||||||||||||||| |||||||| ||||||||||| ||||||||||||| | | ||| |||||| ||||||||||| ||| |
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| T |
46996116 |
---tcaatgaaatgctgttggtttagtgatgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtg |
46996212 |
T |
|
| Q |
315 |
ttaaataacatatttg |
330 |
Q |
| |
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|||||| || ||||| |
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| T |
46996213 |
ctaaatagcaaatttg |
46996228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 47001865 - 47002003
Alignment:
| Q |
15 |
ggacatcaactggtgagagaatatcatttatggtgatatctaaagttgcatgaataaatctagctccgcggctgtttttgcaatcaacgaaaacagtgta |
114 |
Q |
| |
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|||||||||| |||||||||||| |||| | ||||||||||||||||||| |||||||| ||||||| || |||||||||||||| || ||||||||||| |
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| T |
47001865 |
ggacatcaacaggtgagagaataacattgacggtgatatctaaagttgcaagaataaatttagctcctcgactgtttttgcaatcgacaaaaacagtgta |
47001964 |
T |
|
| Q |
115 |
agaatgagggtcttcagattttttagtaacaagacgacc |
153 |
Q |
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||||||||| ||||||||||||| |||||||||| |||| |
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| T |
47001965 |
agaatgaggatcttcagatttttgagtaacaagaagacc |
47002003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 47002012 - 47002085
Alignment:
| Q |
257 |
ttgaagagaagtcccttttggatatagtgtgtagataacatggcaatatcccaatgtgttaaataacatatttg |
330 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||| || |||||| |||||||| |
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| T |
47002012 |
ttgaagagaagtcccttttggatatagtgtgaagatatcatggcaatatcccaaggtcctaaatagcatatttg |
47002085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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