View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_36 (Length: 339)
Name: NF8186_low_36
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_36 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 39414437 - 39414123
Alignment:
| Q |
1 |
aaggggggacttatcccttttataaaatcacataaaagaaaacttatccctagctcctctttgtgtgtgttgatctcctacatcattgtctcgaactgat |
100 |
Q |
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| T |
39414437 |
aaggggggacttatcccttttataaaatcacataaaagaaaacttatccctagctcctccttgtgtgtgttgatctcctacatcattgtctcgaactgat |
39414338 |
T |
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| Q |
101 |
taatggttgggctatcaagtgagacatcattctcagggacactggcatcaaacttatcactcttatctgatgaagtagtggcatatgatcccagagcctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39414337 |
taatggttgggctatcaagtgagacatcattctcagggacactggcatcaaacttatcactcttatctgatgaagtagtggcatatgatcccagagcctg |
39414238 |
T |
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| Q |
201 |
tcaaattatcaaattccaagttgtgtcattgcctcaactttaacttagggactttgttaaatggtgtgtcactttaattaataataacttctctcttgct |
300 |
Q |
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| T |
39414237 |
tcaaattatcaaattccaagttgtgtcattgcctcaactttaacttagggactttgttaaatggtgtgtcactttaattaataataacttctctcttgct |
39414138 |
T |
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| Q |
301 |
caattatatttatat |
315 |
Q |
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||||||||||||||| |
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| T |
39414137 |
caattatatttatat |
39414123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 43 - 315
Target Start/End: Complemental strand, 41594 - 41322
Alignment:
| Q |
43 |
cttatccctagctcctctttgtgtgtgttgatctcctacatcattgtctcgaactgattaatggttgggctatcaagtgagacatcattctcagggacac |
142 |
Q |
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| T |
41594 |
cttatccctagctcctccttgtgtgtgttgatctcctacatcattgtctcgaactgattaatggttgggctatcaagtgagacatcattctcagggacac |
41495 |
T |
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| Q |
143 |
tggcatcaaacttatcactcttatctgatgaagtagtggcatatgatcccagagcctgtcaaattatcaaattccaagttgtgtcattgcctcaacttta |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41494 |
tggcatcaaacttatcactcttatctgatgaagtagtgggatatgatcccagagcctgtcaaattatcaaattccaagttgtgtcattgcctcaacttta |
41395 |
T |
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| Q |
243 |
acttagggactttgttaaatggtgtgtcactttaattaataataacttctctcttgctcaattatatttatat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41394 |
acttagggactttgttaaatggtgtgtcactttaattaataataacttctctcttgctcaattatatttatat |
41322 |
T |
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