View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_4 (Length: 679)
Name: NF8186_low_4
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 286 - 660
Target Start/End: Complemental strand, 52583443 - 52583069
Alignment:
| Q |
286 |
gttgtgcttaattttcaggttgagggtagatatgagaagtactaccatcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctg |
385 |
Q |
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| T |
52583443 |
gttgtgcttaattttcaggttgagggtagatatgagaagtactaccatcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctg |
52583344 |
T |
|
| Q |
386 |
caaagtgttacactgctctggcacttcaagcaatgtctaggcatttttgtagcttaagagatgccataatgtcccaaataaatgctgagaaaagaaaact |
485 |
Q |
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| T |
52583343 |
caaagtgttacactgctctggcacttcaagcaatgtctaggcatttttgtagcttaagagatgccataatgtcccaaataaatgctgagaaaagaaaact |
52583244 |
T |
|
| Q |
486 |
gtttcaggatgtacctaaaattaatagtggattgtctcaactgagcttatttgagagagataataatagacagactagaatgtctctccaacaacttgga |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583243 |
gtttcaggatgtacctaaaattaatagtggattgtctcaactgagcttatttgagagagataataatagacagactagaatgtctctccaacaacttgga |
52583144 |
T |
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| Q |
586 |
gtcattcaaaaccaacgacaagtttggagacctattagagggttacctgaaacatctgtagcaattcttcgtgct |
660 |
Q |
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| T |
52583143 |
gtcattcaaaaccaacgacaagtttggagacctattagagggttacctgaaacatctgtagcaattcttcgtgct |
52583069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 52583930 - 52583650
Alignment:
| Q |
16 |
acatcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttctcttc-----ctgattttatgttcactagtactaataaagaaa |
110 |
Q |
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| T |
52583930 |
acatcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttctcttctcttcctgattttatgttcactagtactaataaagaaa |
52583831 |
T |
|
| Q |
111 |
attgcatcatacttgagtagtattcgaat------------taagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatc |
198 |
Q |
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| T |
52583830 |
attgcatcatacttgagtagtattcgaataaaaagcttaattaagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatc |
52583731 |
T |
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| Q |
199 |
aaattgttttggtatgaactatataaatgttttcataagctatctttgagaatttatagacatggtataagctatttctat |
279 |
Q |
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| T |
52583730 |
aaattgttttggtatgaactatataaatgttttcataagctatctttgagaatttatagacatggtataagctatttctat |
52583650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 19395216 - 19395153
Alignment:
| Q |
188 |
aaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatt |
252 |
Q |
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| T |
19395216 |
aaacgaaaatcaaattgtttttgtataagctata-aaatgttttcattagctatcttggagaatt |
19395153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 38033892 - 38033934
Alignment:
| Q |
153 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
195 |
Q |
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| T |
38033892 |
ttatcaaataagtgtttatgtataagttatttatataacaaaa |
38033934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 43133890 - 43133932
Alignment:
| Q |
153 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
195 |
Q |
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|||||| |||||| |||||||||||||||||| |||||||||| |
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| T |
43133890 |
ttatcacataagtatttatgtataaattatttctaaaacaaaa |
43133932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 5939015 - 5939051
Alignment:
| Q |
160 |
ataagtgtttatgtataaattatttttaaaacaaaaa |
196 |
Q |
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|||||||||||||||||| ||||||||| |||||||| |
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| T |
5939015 |
ataagtgtttatgtataagttatttttataacaaaaa |
5939051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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