View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_low_41 (Length: 306)

Name: NF8186_low_41
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_low_41
NF8186_low_41
[»] chr7 (3 HSPs)
chr7 (90-222)||(1608827-1608960)
chr7 (114-214)||(2187860-2187960)
chr7 (114-222)||(19632944-19633053)
[»] chr5 (3 HSPs)
chr5 (114-222)||(37806540-37806650)
chr5 (114-182)||(37627431-37627499)
chr5 (91-209)||(33614668-33614785)
[»] chr8 (5 HSPs)
chr8 (114-214)||(29822632-29822733)
chr8 (91-163)||(454093-454166)
chr8 (114-185)||(7094160-7094230)
chr8 (114-185)||(7097893-7097963)
chr8 (123-169)||(45463051-45463097)
[»] chr1 (1 HSPs)
chr1 (90-214)||(41313949-41314075)
[»] chr2 (2 HSPs)
chr2 (90-169)||(19215544-19215624)
chr2 (107-163)||(19589281-19589337)
[»] chr3 (2 HSPs)
chr3 (89-162)||(5187495-5187569)
chr3 (114-163)||(8377591-8377641)
[»] chr4 (2 HSPs)
chr4 (90-154)||(11992129-11992192)
chr4 (139-209)||(637728-637798)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 1608827 - 1608960
Alignment:
Q  90 aaaaacatcatcatttaatcaaccagtaaatacatatataaaataagaaatggagcgccctttcccttaccttagcaatatagcagctattaagatatct 189  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  1608827 aaaaacatcatcctttaaacaaccagtaaatacatatataaaataaaaaatggagcgcccttttccttaccttagcaatatagcagctattaatatttct 1608926  T
Q  190 actcgtggtctttgctccactgaat-tacacttg 222  Q
    |||| |||||||||||||||||||| ||||||||    
T  1608927 actcatggtctttgctccactgaatctacacttg 1608960  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 2187960 - 2187860
Alignment:
Q  114 agtaaatacatatataaaataagaaatggagcgccctttcccttaccttagcaatatagcagctattaagatatctactcgtggtctttgctccactgaa 213  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||    
T  2187960 agtaaatacatatataaaataaaaaatggagcgccctttcccttaccttagcaatatagcagctattaatatttctactcatggtctttgctccactgaa 2187861  T
Q  214 t 214  Q
    |    
T  2187860 t 2187860  T

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Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 19632944 - 19633053
Alignment:
Q  114 agtaaatacatatataaaataagaaatggagcgccctttcccttaccttagcaatatagcagctattaagatatctactcgtggtctttgctccactgaa 213  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || | ||||| |||||||||||||||||||    
T  19632944 agtaaatacatatataaaataaaaaatggagcgccctttcccttaccttaacaatatagcagctattaatatttatactcatggtctttgctccactgaa 19633043  T
Q  214 t-tacacttg 222  Q
    | ||||||||    
T  19633044 tctacacttg 19633053  T

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Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 37806540 - 37806650
Alignment:
Q  114 agtaaatacatatataaaataagaaa-tggagcgccctttcccttaccttagcaatatagcagctattaagatatctactcgtggtctttgctccactga 212  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  37806540 agtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttagcaatatagcagctattaatatttctactcatggtctttgctccactga 37806639  T
Q  213 at-tacacttg 222  Q
    || ||||||||    
T  37806640 atctacacttg 37806650  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 37627431 - 37627499
Alignment:
Q  114 agtaaatacatatataaaataagaaatggagcgccctttcccttaccttagcaatatagcagctattaa 182  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37627431 agtaaatacatatataaaataaaaaatggagcgccctttcccttaccttagcaatatagcagctattaa 37627499  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 33614668 - 33614785
Alignment:
Q  91 aaaacatcatcatttaatcaaccagtaaatacatatataaaataagaaatggagcgccctttcccttaccttagcaatatagcagctattaagatatcta 190  Q
    ||||||| ||||| | |||||| |||| ||| ||||| |||||||  ||||||| ||||||| |||||||||||| | ||||  ||||||||||| || |    
T  33614668 aaaacataatcatgttatcaacaagtagatatatataaaaaataaataatggagtgcccttttccttaccttagc-agatagtcgctattaagatttcaa 33614766  T
Q  191 ctcgtggtctttgctccac 209  Q
    | | |||||||||||||||    
T  33614767 cccatggtctttgctccac 33614785  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 29822733 - 29822632
Alignment:
Q  114 agtaaatacatatataaaataagaaa-tggagcgccctttcccttaccttagcaatatagcagctattaagatatctactcgtggtctttgctccactga 212  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||    
T  29822733 agtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttagcaatatagcagctattaagatttcaactcgtggtatttgctccactga 29822634  T
Q  213 at 214  Q
    ||    
T  29822633 at 29822632  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 454093 - 454166
Alignment:
Q  91 aaaacatcatcatttaatcaaccagtaaatacatatataaaat-aagaaatggagcgccctttcccttacctta 163  Q
    ||||||||||||||| | |||| ||||| |||||||||||||| || ||||||||||||||||||| |||||||    
T  454093 aaaacatcatcattttaacaacaagtaactacatatataaaataaaaaaatggagcgccctttcccgtacctta 454166  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 7094160 - 7094230
Alignment:
Q  114 agtaaatacatatataaaataagaaa-tggagcgccctttcccttaccttagcaatatagcagctattaagat 185  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||  ||||||||| |||||||    
T  7094160 agtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttaaca--atagcagctcttaagat 7094230  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 7097893 - 7097963
Alignment:
Q  114 agtaaatacatatataaaataagaaa-tggagcgccctttcccttaccttagcaatatagcagctattaagat 185  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||  ||||||||| |||||||    
T  7097893 agtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttaaca--atagcagctcttaagat 7097963  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 45463051 - 45463097
Alignment:
Q  123 atatataaaataagaaatggagcgccctttcccttaccttagcaata 169  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||    
T  45463051 atatataaaataaataatggagcgccctttcccttaccttagcaata 45463097  T

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Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 90 - 214
Target Start/End: Original strand, 41313949 - 41314075
Alignment:
Q  90 aaaaacatcatcatttaatcaaccagtaaatacatatataaaata--agaaatggagcgccctttcccttaccttagcaatatagcagctattaagatat 187  Q
    |||||||||||||||| | |||| ||||| |||||||||||||||  | |||||||||||| ||||||||||||||||||||||||||||||||| || |    
T  41313949 aaaaacatcatcattttaacaacaagtaactacatatataaaatagaaaaaatggagcgccatttcccttaccttagcaatatagcagctattaatattt 41314048  T
Q  188 ctactcgtggtctttgctccactgaat 214  Q
    |||||| ||||||||||||||| ||||    
T  41314049 ctactcatggtctttgctccacggaat 41314075  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 19215624 - 19215544
Alignment:
Q  90 aaaaacatcatcatttaatcaaccagtaaatacatatataaaata-agaaatggagcgccctttcccttaccttagcaata 169  Q
    |||||||||||||||| | |||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||    
T  19215624 aaaaacatcatcattttaacaacaagtaaatacatatataaaatagaaaaatggagcgccctttcccttaccttaacaata 19215544  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 19589337 - 19589281
Alignment:
Q  107 atcaaccagtaaatacatatataaaataagaaatggagcgccctttcccttacctta 163  Q
    |||||| |||| ||||||||| |||||||  ||||||||||| ||| ||||||||||    
T  19589337 atcaacaagtagatacatataaaaaataaataatggagcgccattttccttacctta 19589281  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 5187495 - 5187569
Alignment:
Q  89 caaaaacatcatcatttaatcaaccagtaaatacatatataaaat-aagaaatggagcgccctttcccttacctt 162  Q
    ||||||| ||||||||| | |||| |||||||||||||||||||| || |||||||||| |||||||||||||||    
T  5187495 caaaaacgtcatcattttaacaacaagtaaatacatatataaaataaaaaaatggagcgacctttcccttacctt 5187569  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 8377641 - 8377591
Alignment:
Q  114 agtaaatacatatataaaataagaaa-tggagcgccctttcccttacctta 163  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  8377641 agtaaatacatatataaaataaaaaaatggagcgccctttcccttacctta 8377591  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 11992129 - 11992192
Alignment:
Q  90 aaaaacatcatcatttaatcaaccagtaaatacatatataaaataagaaatggagcgccctttcc 154  Q
    |||||||| ||| ||||| |||| |||||||||||||||||||||| ||||||||||||||||||    
T  11992129 aaaaacattatcttttaa-caacaagtaaatacatatataaaataaaaaatggagcgccctttcc 11992192  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 637798 - 637728
Alignment:
Q  139 atggagcgccctttcccttaccttagcaatatagcagctattaagatatctactcgtggtctttgctccac 209  Q
    ||||||||| ||||||||||||||| |||   ||||||| ||||||| || ||||||||||||||||||||    
T  637798 atggagcgcactttcccttaccttaacaaagcagcagctgttaagatttcaactcgtggtctttgctccac 637728  T

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