View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_42 (Length: 305)
Name: NF8186_low_42
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 40110022 - 40110284
Alignment:
| Q |
17 |
ttggtggtagagacaaatatgatatttttatgttatagaggaatatatcatatatgtagtctgaattggttaggtaaaaaagaatggagaatttcaactt |
116 |
Q |
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| T |
40110022 |
ttggtggtagagacaaatatgatatttttatgttatagaggaatatag---atatgtagtctgaattggttaggtaaaaaagaatggagaatttc----- |
40110113 |
T |
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| Q |
117 |
tcaagggttattttgtactcttggattccaagagaaaaatttcaaaggtttagattttttaagacagcacaagataatgatcatggttgatcagataatt |
216 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40110114 |
--aagggttattttgtactcttggattagaagagaaaaatttcaaaggtttagattttttaagacagcacaagataatgatcatggttgatcagataatt |
40110211 |
T |
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| Q |
217 |
ataatttaatgttaacca--nnnnnnnnccagttctatccgaacgtgtttatttggtttcattataaggttac |
287 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40110212 |
ataatttaatgttaaccattttttttttccagttctatccgaacgtgtttatttggtttcattataaggttac |
40110284 |
T |
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