View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_48 (Length: 284)
Name: NF8186_low_48
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 9656667 - 9656940
Alignment:
| Q |
1 |
tcttcggcagtgctggcaacagcatcaaaaccaatgtatgcnnnnnnngcggttgcagaaccagcaaccattccatctaccccaaaaggaaaatacctat |
100 |
Q |
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| T |
9656667 |
tcttcggcagtgctggcaacagcatcaaaaccaatgtatgcaaaaaaagctgttgcagaaccagcaaccattccatctaccccaaaaggaaaatacctat |
9656766 |
T |
|
| Q |
101 |
taattaaaacaagagataaatattattcagtaacctgaagagaccaaatatagagtgggggtaaagatgtaaaagttaccctgttgggagtttatatcca |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9656767 |
ta-ttaaaacaagagataaatattattcagtaacctgaagagaccaaatatagagtgggggtaaagatgtaaaagttaccctgttgggagtttatatcca |
9656865 |
T |
|
| Q |
201 |
atccatccagttttgaatcctaaataaccaccagctactatgataaacattaaagcacagatattcactgatgtc |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9656866 |
atccatccagttttgaatcctaaataaccaccagctactatgataaacattaaagcacagatattcactgatgtc |
9656940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 163 - 274
Target Start/End: Original strand, 9640540 - 9640649
Alignment:
| Q |
163 |
aaagatgtaaaagttaccctgttgggagtttatatccaatccatccagttttgaatcctaaataaccaccagctactatgataaacattaaagcacagat |
262 |
Q |
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| T |
9640540 |
aaagatgtaaa--ttaccctgtagggagtttatatccaatccatccagttttgaatcccaaataaccaccagctacgatgataaacatcaaagcacatat |
9640637 |
T |
|
| Q |
263 |
attcactgatgt |
274 |
Q |
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|||||||||||| |
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| T |
9640638 |
attcactgatgt |
9640649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 9630513 - 9630802
Alignment:
| Q |
1 |
tcttcggcagtgctggcaacagcatcaaaaccaatgtatgcnnnnnnngcggttgcagaaccagcaaccattccatctaccccaaaaggaaaatacctat |
100 |
Q |
| |
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||||| ||||||||||||| || |||||||| || ||||| || |||||||||| ||||||||||||||||| |||||| ||||||||||||| |
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| T |
9630513 |
tcttcagcagtgctggcaattgcttcaaaacctatatatgcaaaaaatgctgttgcagaactagcaaccattccatctatcccaaatggaaaatacctat |
9630612 |
T |
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| Q |
101 |
taattaaaacaagagataaatattattcagtaacctgaagagaccaaatataga----gtgggggt---------aaagatgtaaaag----ttaccctg |
183 |
Q |
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||||||||||||| | |||||||||||| |||| ||||||||| ||| ||||| || ||| | ||||||||| | ||||||| |
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| T |
9630613 |
-aattaaaacaagatacaaatattattcaataacttgaagagacgaaaaatagatgtagtagggatgtgttgaagaaagatgtagattacgcttaccctt |
9630711 |
T |
|
| Q |
184 |
ttgggagtttatatccaatccatccagttttgaatcctaaataaccaccagctactatgataaacattaaagcacagatattcactgatgt |
274 |
Q |
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| T |
9630712 |
tagggagttcatatccaatccatccagttttgaatcccaaataaccaccagctactatgacaaacatcaaagcacatatattcattgatgt |
9630802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 9615966 - 9616118
Alignment:
| Q |
1 |
tcttcggcagtgctggcaacagcatcaaaaccaatgtatgcnnnnnnngcggttgcagaaccagcaaccattccatctaccccaaaaggaaaatacctat |
100 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||||| || |||||||||| |||||||||||||| ||||||||| ||||||||||||| |
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| T |
9615966 |
tcttcggcagtgctggcaattgcttcaaaacctatgtatgcaaaaaaggctgttgcagaactagcaaccattccatttaccccaaatggaaaatacctat |
9616065 |
T |
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| Q |
101 |
taattaaaacaagagataaatattattcagtaacctgaagagaccaaatataga |
154 |
Q |
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|||||||||| ||||||||||||||||| |||| ||||||||||||| ||||| |
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| T |
9616066 |
-aattaaaacaggagataaatattattcaataacttgaagagaccaaaaataga |
9616118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 176 - 275
Target Start/End: Original strand, 9616157 - 9616256
Alignment:
| Q |
176 |
ttaccctgttgggagtttatatccaatccatccagttttgaatcctaaataaccaccagctactatgataaacattaaagcacagatattcactgatgtc |
275 |
Q |
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||||||| | || |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| ||||||| ||||||| |
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| T |
9616157 |
ttaccctttaggaagttcatatccaatccatccagttttgaatcccaaataaccaccagctactatgacaaacatcaaagcacatatattcattgatgtc |
9616256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 9640378 - 9640501
Alignment:
| Q |
1 |
tcttcggcagtgctggcaacagcatcaaaaccaatgtatgcnnnnnnngcggttgcagaaccagcaaccattccatctaccccaaaaggaaaatacctat |
100 |
Q |
| |
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||||| |||| ||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | ||||||||||| |
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| T |
9640378 |
tcttcagcagcgctggcaactgcatcaaaacctatgtatgcaaaaaaagctgttgcagaaccagcaaccattccatctactccaaatgcaaaatacctat |
9640477 |
T |
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| Q |
101 |
taattaaaacaagagataaatatta |
125 |
Q |
| |
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| |||||||||||| | |||||||| |
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| T |
9640478 |
t-attaaaacaagatacaaatatta |
9640501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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