View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_5 (Length: 631)
Name: NF8186_low_5
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 510; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 17 - 575
Target Start/End: Original strand, 7254006 - 7254562
Alignment:
| Q |
17 |
caaaactttctctgattcaatctcaaaaaattcttctttttccaacaacccatttctcccataacctaaatcaccatcaaactcaaccaaattcctttct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7254006 |
caaaactttctctgattcaatctcaaaaaattcttctttttccaacaacccatttctcccataacctaaatcaccatcaaactcaaccaaattcctttct |
7254105 |
T |
|
| Q |
117 |
gggtcaacaagtttttcactttcaatctcaaaactctcatcttgaacattcatcaaacaccttaactgcaacctcttttccctcaattcagcataagcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7254106 |
gggtcaacaagtttttcactttcaatctcaaaactctcatcttgaacattcatcaaacaccttaactgcaacctcttttccctcaattcagcataagcat |
7254205 |
T |
|
| Q |
217 |
tgtaattcctccctctctccataacaaaactatcttctaaagaagaaagtctaagaggacaaggttggtttgaatttgaattttggttaaggatcaatga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7254206 |
tgtaattcctccctctctccataacaaaactatcttctaaagaagaaagtctaagaggacaaggttggtttgaatttgaattttggttaaggatcaatgg |
7254305 |
T |
|
| Q |
317 |
aattggatccaggacatgaagtagaggttcaagaattgggtttgtttttgacatgatgtttggnnnnnnnatgatcaaatgttgaaattgtgaaagttaa |
416 |
Q |
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| T |
7254306 |
aattggatcaaggacatgaagtagaggttcaagaattgggtttgtttttgacatgatgtttggtttttttatgatcaaatgttgaaattgtgaaagttaa |
7254405 |
T |
|
| Q |
417 |
ggtttttgagagtgtgtttttgtttgtgtaaagtgaaaaataagtgcttttgtgtaacggtctaattttgggtgagagagtgaagtcaaacctaacgttt |
516 |
Q |
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| T |
7254406 |
ggtttttgagagtgtg-ttttgttcgtgtaaagtg-aaaataagtgcttttgtgtaacggtctaattttgggtgagagagtgaagtcaaacctaacgttt |
7254503 |
T |
|
| Q |
517 |
aacgttaataaatcagatactttatttgtaatttttcttgcttaaccaaataattaaat |
575 |
Q |
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| T |
7254504 |
aacgttaataaatcagatactttatttgtaatttttcttgcttaaccaaataattaaat |
7254562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 7253854 - 7253895
Alignment:
| Q |
36 |
atctcaaaaaattcttctttttccaacaacccatttctccca |
77 |
Q |
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| T |
7253854 |
atctcaaaaaattcttctttttccaaagacccatttctccca |
7253895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 7253640 - 7253688
Alignment:
| Q |
32 |
ttcaatctcaaaaaattcttctttttccaacaacccatttctcccataa |
80 |
Q |
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||||||||||||| |||| |||| ||||| |||||| |||||||||||| |
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| T |
7253640 |
ttcaatctcaaaatattcatcttgttccaccaacccttttctcccataa |
7253688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 7253764 - 7253812
Alignment:
| Q |
51 |
tctttttccaacaacccatttctcccataacctaaatcaccatcaaact |
99 |
Q |
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||||||||||| |||| |||||||||||||| |||||||| ||||||| |
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| T |
7253764 |
tctttttccaatgacccttttctcccataacccaaatcaccttcaaact |
7253812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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