View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_50 (Length: 280)
Name: NF8186_low_50
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 46034396 - 46034127
Alignment:
| Q |
1 |
ttcctcgtcgatatggcagaacgggcagctagtgtctagagtaattccttttgtctccagcttacatctagttggtaagatacatttagcagctctccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46034396 |
ttcctcgtcgatatggcagaacgggcagctagtgtctagagtaattccttttgtctccagcttacatctagttggtaagatacatttagcagctctccat |
46034297 |
T |
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| Q |
101 |
aagaaattcctgaccctttgaggagttctaactttccaaatggccttccacataccggtgttacacattactgatgcttcaggggtgcctcgtaatgtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46034296 |
aagaaattcctgaccctttgaggagttctaactttccaaatggccttctacataccggtgttacacgttactgatgcttcaggggtgcctcgtaatgtct |
46034197 |
T |
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| Q |
201 |
cttccttgagcagatggtatgctgatcgaacggagtattgaccattcctttcccaattccaaaccttctt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46034196 |
cttccttgagcagatggtatgctgatcgaacggagtattgaccattcctttcccaattccaaaccttctt |
46034127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 39488274 - 39488005
Alignment:
| Q |
1 |
ttcctcgtcgatatggcagaacgggcagctagtgtctagagtaattccttttgtctccagcttacatctagttggtaagatacatttagcagctctccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39488274 |
ttcctcgtcgatatggcagaacgggcagctagtgtctagagtaattccttttgtctccagcttacatctagttggtaagatacatttagcagctctccat |
39488175 |
T |
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| Q |
101 |
aagaaattcctgaccctttgaggagttctaactttccaaatggccttccacataccggtgttacacattactgatgcttcaggggtgcctcgtaatgtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
39488174 |
aagaaattcctgaccctttgaggagttctaactttccaaatggccttccacataccggtgttacacgttactgatacttcaggggtgcctcgtaatgtct |
39488075 |
T |
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| Q |
201 |
cttccttgagcagatggtatgctgatcgaacggagtattgaccattcctttcccaattccaaaccttctt |
270 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39488074 |
cttccttgagtagatggtatgctgatcgaacggagtattgaccattcctttcccaattccaaaccttctt |
39488005 |
T |
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