View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_low_51 (Length: 278)

Name: NF8186_low_51
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_low_51
NF8186_low_51
[»] chr4 (10 HSPs)
chr4 (20-276)||(55663528-55663784)
chr4 (113-276)||(55657390-55657553)
chr4 (49-276)||(52982847-52983080)
chr4 (113-276)||(55619041-55619203)
chr4 (113-276)||(55626345-55626507)
chr4 (113-276)||(54860816-54860979)
chr4 (113-276)||(54630339-54630502)
chr4 (113-276)||(3671087-3671250)
chr4 (197-276)||(54630231-54630310)
chr4 (118-276)||(55637235-55637393)
[»] chr2 (1 HSPs)
chr2 (113-276)||(13403642-13403805)
[»] chr8 (2 HSPs)
chr8 (113-242)||(9891567-9891696)
chr8 (187-276)||(17220168-17220257)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 55663528 - 55663784
Alignment:
Q  20 gagcacaccaaggagtgcatagaccatagaagcgtaggattttacgtttcagatcccgatcttgtctaccatggcctcgagttagggtctcaccttccaa 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55663528 gagcacaccaaggggtgcatagaccatagaagcgtaggattttacatttcagatcccgatcttgtctaccatggcctcgagttagggtctcaccttccaa 55663627  T
Q  120 ccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatcatctatc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  55663628 ccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactctgcaagttttcaatcttttccaatccctcaacatcatctatc 55663727  T
Q  220 atctgagcatacaagttgacatcgccggtgttacaaaagtttttctctgcttctcca 276  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  55663728 atctgagcatacaagttgacatctccggtgttacaaaagtttttctccgcttctcca 55663784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 55657390 - 55657553
Alignment:
Q  113 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 212  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||||| ||| ||  |||||| |||||||||| |||||| ||||||||||||||||    
T  55657390 cttccaaccaatatgtctcaagaattttaacagccttctcataaatttcattgttgtcatgactctgcaagttttcgatcttttccaatccctcaacatc 55657489  T
Q  213 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctctgcttctcca 276  Q
    |||||||||||||||||||||||||||||| || |||||||||||| ||||||| |||||||||    
T  55657490 atctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctcca 55657553  T

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Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 49 - 276
Target Start/End: Original strand, 52982847 - 52983080
Alignment:
Q  49 aagcgtaggattttacgtttcagatcccgatcttgtctaccatggcctcgagttagggtctcaccttc------caaccaatatgtctcgacgattctaa 142  Q
    ||||||| ||| ||| |||||||||| || ||||||| |||||||| | ||| ||| |||||| ||||      |||||||||||||||||  |||||||    
T  52982847 aagcgtacgatcttatgtttcagatcacggtcttgtcgaccatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaa 52982946  T
Q  143 cagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatcatctatcatctgagcatacaagttgacatc 242  Q
    |||| ||||||||||||||| ||| ||  |||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||||||    
T  52982947 cagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatc 52983046  T
Q  243 gccggtgttacaaaagtttttctctgcttctcca 276  Q
     |  |||||||||||  ||||||| |||||||||    
T  52983047 tctcgtgttacaaaaccttttctccgcttctcca 52983080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 55619041 - 55619203
Alignment:
Q  113 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 212  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||||||  ||| ||  |||||| |||||||||| || ||||| ||||||||| ||||    
T  55619041 cttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgactctgcaagttttcgatttttcc-aatccctcagcatc 55619139  T
Q  213 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctctgcttctcca 276  Q
    |||||||||||||||||||||||||||||| || |||||||||||| ||||||| |||||||||    
T  55619140 atctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctcca 55619203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 55626345 - 55626507
Alignment:
Q  113 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 212  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||||||  ||| ||  |||||| |||||||||| || ||||| ||||||||| ||||    
T  55626345 cttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgactctgcaagttttcgatttttcc-aatccctcagcatc 55626443  T
Q  213 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctctgcttctcca 276  Q
    |||||||||||||||||||||||||||||| || |||||||||||| ||||||| |||||||||    
T  55626444 atctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctcca 55626507  T

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Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 54860816 - 54860979
Alignment:
Q  113 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 212  Q
    ||||||||||||||||||| |  ||| |||||||||||||||||||||||  || ||  ||| || ||| ||| ||||||||| ||||||||||| ||||    
T  54860816 cttccaaccaatatgtctcaagaattttaacagccttctcataaatttcatagttgtcatgattctgcatgttatcaatcttttccaatccctcagcatc 54860915  T
Q  213 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctctgcttctcca 276  Q
     ||||||||||||||||||||||||||||| || ||||||| |||| |||||||  ||||||||    
T  54860916 ctctatcatctgagcatacaagttgacatctcccgtgttaccaaagcttttctccacttctcca 54860979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 113 - 276
Target Start/End: Complemental strand, 54630502 - 54630339
Alignment:
Q  113 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 212  Q
    |||||||||||||| ||||||  ||| || |||||||||||||||||||  |||  |  |||||   |||||||||||||||| ||||||||| ||||||    
T  54630502 cttccaaccaatatctctcgagaattttagcagccttctcataaatttctctgtcttcatgactatccaagttttcaatcttttccaatcccttaacatc 54630403  T
Q  213 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctctgcttctcca 276  Q
     |||||||||||||||||||| |||||||| || ||||||| |||  |||||||||||||||||    
T  54630402 ctctatcatctgagcatacaaattgacatctcccgtgttaccaaatcttttctctgcttctcca 54630339  T

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Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 3671087 - 3671250
Alignment:
Q  113 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 212  Q
    ||||||||||||||||||| |  ||| | |||||||||||||||||||||  || ||  |||||| |||||||| |||||||| ||||||||||  | ||    
T  3671087 cttccaaccaatatgtctcaagaattttgacagccttctcataaatttcatagttgtcatgactctgcaagtttccaatcttttccaatccctccgcgtc 3671186  T
Q  213 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctctgcttctcca 276  Q
      |||||||| ||||||||||||||||||| || |||| ||    ||||||||| |||||||||    
T  3671187 ccctatcatcagagcatacaagttgacatctcccgtgtaaccggggtttttctccgcttctcca 3671250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 54630310 - 54630231
Alignment:
Q  197 ccaatccctcaacatcatctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctctgcttctcca 276  Q
    |||||||||||||||| | |||| |||||||||||||||||||||| ||||||||||  | | |||||||||||||||||    
T  54630310 ccaatccctcaacatcctttatcgtctgagcatacaagttgacatctccggtgttacttatgcttttctctgcttctcca 54630231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 276
Target Start/End: Complemental strand, 55637393 - 55637235
Alignment:
Q  118 aaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatcatcta 217  Q
    ||||||||||| || |  ||| ||||||||||||||  ||||||| ||| ||  |||||| ||||||||||||||| | || | || ||| | |||  ||    
T  55637393 aaccaatatgtttcaagaattttaacagccttctcacgaatttcattgttgtcatgactctgcaagttttcaatctctacccaaccgtcagcgtcaggta 55637294  T
Q  218 tcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctctgcttctcca 276  Q
    |||||||| |||||||||||||||| || ||||| | | || |||| || |||||||||    
T  55637293 tcatctgaacatacaagttgacatctcccgtgtttccatagcttttatcggcttctcca 55637235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 113 - 276
Target Start/End: Complemental strand, 13403805 - 13403642
Alignment:
Q  113 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 212  Q
    |||||||||||||||||||||  ||| ||||||||||||| ||||||||| ||| ||  |||||| ||| ||| ||||||||| ||||||||||  | ||    
T  13403805 cttccaaccaatatgtctcgagaattttaacagccttctcgtaaatttcattgttgtcatgactctgcaggttctcaatcttttccaatccctccgcctc 13403706  T
Q  213 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctctgcttctcca 276  Q
    |||||||||||||||||||||||||||||| || | ||||| |||| |||||||||||||||||    
T  13403705 atctatcatctgagcatacaagttgacatctcccgcgttaccaaagcttttctctgcttctcca 13403642  T

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Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 9891696 - 9891567
Alignment:
Q  113 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 212  Q
    ||||||||||||||||||| |  ||| | ||||||||| |||||||||||  || ||  |||||| ||||||||||||||||| ||||||||||| | ||    
T  9891696 cttccaaccaatatgtctcaagaattttgacagccttcccataaatttcatagttgtcatgactctgcaagttttcaatcttttccaatccctcagcgtc 9891597  T
Q  213 atctatcatctgagcatacaagttgacatc 242  Q
     ||||||||| |||||||||||||||||||    
T  9891596 ctctatcatcagagcatacaagttgacatc 9891567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 187 - 276
Target Start/End: Complemental strand, 17220257 - 17220168
Alignment:
Q  187 tcaatctttcccaatccctcaacatcatctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctctgcttctcca 276  Q
    ||||||||| ||||||||||| |||| |||||||| |||||||||||||||||||| || ||||||| |||| ||||||| |||||||||    
T  17220257 tcaatcttttccaatccctcagcatcttctatcatttgagcatacaagttgacatctcccgtgttaccaaagcttttctccgcttctcca 17220168  T

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