View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_57 (Length: 263)
Name: NF8186_low_57
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 91 - 242
Target Start/End: Complemental strand, 53396329 - 53396178
Alignment:
| Q |
91 |
ccttgcaatcatcttcaatctcagattcttgtttaggactatcactatcaagtgcccttttttcttgctcttcatcttcatcatcatcttcatctccaac |
190 |
Q |
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| T |
53396329 |
ccttgcaatcatcttcaatctcagattcttgtttaggactatcactatcaagtgcccttttttcttgctcttcatcttcaacatcatcttcatctccaac |
53396230 |
T |
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| Q |
191 |
cccattattttccctcctcacaacaccaccattttttgcattcctctctgct |
242 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
53396229 |
cccattattttccctcctcacaacactaccattttttgcattcctctctgct |
53396178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 92 - 242
Target Start/End: Original strand, 18845673 - 18845827
Alignment:
| Q |
92 |
cttgcaatcatcttcaatctcagattcttgtttaggactatcactatcaagtgcccttttttct----tgctcttcatcttcatcatcatcttcatctcc |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||| |||||||||||||||| |
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| T |
18845673 |
cttgcaatcatcttcaatctcagattcttgtttaggactatcactatcaagtgcccttttctctctcttgctcttcctcatcaacatcatcttcatctcc |
18845772 |
T |
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| Q |
188 |
aaccccattattttccctcctcacaacaccaccattttttgcattcctctctgct |
242 |
Q |
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| T |
18845773 |
caacccattattttccctcctcacaagaccaccattttttgcattcctctctgct |
18845827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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