View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_6 (Length: 546)
Name: NF8186_low_6
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 23 - 529
Target Start/End: Complemental strand, 13944620 - 13944114
Alignment:
| Q |
23 |
gtgcttgagtagctatagttatgccatgaatactttcctttcgttgactttgattaagcatatgtgataaaacatctgcacaaataataaagagataggg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944620 |
gtgcttgagtagctatagttatgccatgaatactttcctttcgttgactttgattaagcatatgtgataaaacatctgcacaaataataaagagataggg |
13944521 |
T |
|
| Q |
123 |
agagaatccccctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaactaatacataaaataa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13944520 |
agagaatccccctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaactaacacataaaataa |
13944421 |
T |
|
| Q |
223 |
tggttctaatcatcttcgacaggaaacccataataacaagagtttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaat |
322 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944420 |
tggttctaatcatcttcgacaggaaacccatagtaacaagattttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaat |
13944321 |
T |
|
| Q |
323 |
gccaacaactccttttcttttattagtattatttttaagaaaatggaaagcttcataagcaagtaaggagttatctgttatcagcctgctagagatgaag |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944320 |
gccaacaactccttttcttttattagtattatttttaagaaaatggaaagcttcataagcaagtaaggagttatctgttatcagcctgctagagatgaag |
13944221 |
T |
|
| Q |
423 |
gcactataattttgggagtgttatgagatatatcagtgctcgttgtcattattcactttttcttgtgtgcattgtgtgtcttcctttttcaaatttatag |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13944220 |
gcactataattttgggagtgttatgagatatatcagtgctcgttgtcattattcactttttcttttgtgcattgtgtgtcttcctttttcaaatttatag |
13944121 |
T |
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| Q |
523 |
ctgatgt |
529 |
Q |
| |
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||||||| |
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| T |
13944120 |
ctgatgt |
13944114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 23 - 529
Target Start/End: Complemental strand, 14085809 - 14085303
Alignment:
| Q |
23 |
gtgcttgagtagctatagttatgccatgaatactttcctttcgttgactttgattaagcatatgtgataaaacatctgcacaaataataaagagataggg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085809 |
gtgcttgagtagctatagttatgccatgaatactttcctttcgttgactttgattaagcatatgtgataaaacatctgcacaaataataaagagataggg |
14085710 |
T |
|
| Q |
123 |
agagaatccccctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaactaatacataaaataa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14085709 |
agagaatccccctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaactaacacataaaataa |
14085610 |
T |
|
| Q |
223 |
tggttctaatcatcttcgacaggaaacccataataacaagagtttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaat |
322 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085609 |
tggttctaatcatcttcgacaggaaacccatagtaacaagattttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaat |
14085510 |
T |
|
| Q |
323 |
gccaacaactccttttcttttattagtattatttttaagaaaatggaaagcttcataagcaagtaaggagttatctgttatcagcctgctagagatgaag |
422 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085509 |
gccaacaactccttttcttttattagtattatttttaagaaaatggaaagcttcataagcaagtaaggagttatctgttatcagcctgctagagatgaag |
14085410 |
T |
|
| Q |
423 |
gcactataattttgggagtgttatgagatatatcagtgctcgttgtcattattcactttttcttgtgtgcattgtgtgtcttcctttttcaaatttatag |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14085409 |
gcactataattttgggagtgttatgagatatatcagtgctcgttgtcattattcactttttcttttgtgcattgtgtgtcttcctttttcaaatttatag |
14085310 |
T |
|
| Q |
523 |
ctgatgt |
529 |
Q |
| |
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||||||| |
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|
| T |
14085309 |
ctgatgt |
14085303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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