View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_61 (Length: 253)
Name: NF8186_low_61
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_61 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 41686398 - 41686159
Alignment:
| Q |
13 |
agaagaacagtgaattggagttagaagttcgtgagctgagaaagttgaaggatgctcaaggtgaatcatcatcaggtataaaaattctgcatgtatctct |
112 |
Q |
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| T |
41686398 |
agaagaacagtgaattggagttagaagttcgtgagctgagaaagttgaaggatgctccagatgaatcatcatcaggtataaaaattctgcatgtatctct |
41686299 |
T |
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| Q |
113 |
tatggttcctataaactatgcattttttccaatcctgttttataaacattgacttcgatacaagtaaagatcggataaatgtttatgtagatttctagat |
212 |
Q |
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| T |
41686298 |
tatgattcctataa-ctatgcattttttccaatcctgttttataaacattgacttcgatacaagtaaagatcggataaatgtttatgtagatttctagat |
41686200 |
T |
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| Q |
213 |
agcttaacatggaaatgtgatttcctctttgttattaagtt |
253 |
Q |
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| T |
41686199 |
agcttaacatggaaatgtgatttcctctttgttattaagtt |
41686159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 228
Target Start/End: Complemental strand, 41659330 - 41659168
Alignment:
| Q |
65 |
tgctcaaggtgaatcatcatcaggtataaaaattctgcatgtatctcttatggttcctataaactatgcattttttccaatcctgttttataaacattga |
164 |
Q |
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| T |
41659330 |
tgctcaaggtgaatcatcatcaggtatgagagttctgcatgtatctcctatgattcctataaactatgcat-ttttacaatgctgctttataaatatcga |
41659232 |
T |
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| Q |
165 |
cttcgatacaagtaaagatcggataaatgtttatgtagatttctagatagcttaacatggaaat |
228 |
Q |
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| T |
41659231 |
attcaatacaagtggtgatcggataaatgctcgtgtagttttttagatagcttggcatggaaat |
41659168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 41708779 - 41708728
Alignment:
| Q |
13 |
agaagaacagtgaattggagttagaagttcgtgagctgagaaagttgaagga |
64 |
Q |
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| T |
41708779 |
agaagaacaatgaattggagttagaagtttgtgaactgagaaagttgaagga |
41708728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 41717851 - 41717800
Alignment:
| Q |
13 |
agaagaacagtgaattggagttagaagttcgtgagctgagaaagttgaagga |
64 |
Q |
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| T |
41717851 |
agaagaacaatgaattggagttagaagtttgtgaactgagaaagttgaagga |
41717800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 41659406 - 41659357
Alignment:
| Q |
13 |
agaagaacagtgaattggagttagaagttcgtgagctgagaaagttgaag |
62 |
Q |
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| T |
41659406 |
agaagaataatgaattggagttggaagtttgtgagctgagaaagttgaag |
41659357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 41687944 - 41687982
Alignment:
| Q |
23 |
tgaattggagttagaagttcgtgagctgagaaagttgaa |
61 |
Q |
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| T |
41687944 |
tgaattggagttcgaagtttgtgagctgagaaagttgaa |
41687982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 41469124 - 41469092
Alignment:
| Q |
60 |
aaggatgctcaaggtgaatcatcatcaggtata |
92 |
Q |
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| T |
41469124 |
aaggatgctcaaggtgcatcatcatcaggtata |
41469092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 41504190 - 41504162
Alignment:
| Q |
13 |
agaagaacagtgaattggagttagaagtt |
41 |
Q |
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| T |
41504190 |
agaagaacagtgaattggagttagaagtt |
41504162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 2439246 - 2439283
Alignment:
| Q |
77 |
atcatcatcaggtataaaaattctgcatgtatctctta |
114 |
Q |
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| T |
2439246 |
atcatcatcaggtatgaaaattctgtatgtatctctta |
2439283 |
T |
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