View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_64 (Length: 246)
Name: NF8186_low_64
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_64 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 12682339 - 12682116
Alignment:
| Q |
19 |
tggattgtgtgtaagacattggaattgtggttgatggaacagtggtggtaggaggtgcagatagaaatgaaggtgttgttgtaggggtgggaatagtact |
118 |
Q |
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| T |
12682339 |
tggattgtgtgtaagacattggaattgtggttgatggaacagtggtggtaggaggtgcagatagaaatgaaggtgttgttgtaggggtgggaatagtact |
12682240 |
T |
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| Q |
119 |
aatgggtggtggtgttattgaaggtgattgatgcattgaagggttgttttcaagggcttgtaattgatcaaagaatctataagttttaccatctgattta |
218 |
Q |
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| T |
12682239 |
aatgggtggtggtgttattgaaggtgattgatgcattgaagggttgttttcaagggcttgtaattgatcaaagaatctataagttttaccatctgattta |
12682140 |
T |
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| Q |
219 |
ccacctcttccttctctgcttctc |
242 |
Q |
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| T |
12682139 |
ccacctcttccttctttggttctc |
12682116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 44554487 - 44554544
Alignment:
| Q |
168 |
tcaagggcttgtaattgatcaaagaatctataagttttaccatctgatttaccacctc |
225 |
Q |
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| T |
44554487 |
tcaagggcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctc |
44554544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 44532839 - 44532771
Alignment:
| Q |
165 |
ttttcaagggcttgtaattgatcaaagaatctataagttttaccatctgatttaccacctcttccttct |
233 |
Q |
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| T |
44532839 |
ttttcaagtgcttgtaattgatcaaaaaatctataggtttttccttctgatttcccacttctaccttct |
44532771 |
T |
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