View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_68 (Length: 243)
Name: NF8186_low_68
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_68 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 20326820 - 20327044
Alignment:
| Q |
19 |
gataagttttggctctagcctgattgataggaattttagtcggataatcggagaaatgttttaggacaactcaccccgagcattccgtaaaatcaattca |
118 |
Q |
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| T |
20326820 |
gataagtttcggctctagcctgattgataggaattttagtcggataatcggagaaatgtttcagaacaactcaccccgagcattccgtaaaatcaattca |
20326919 |
T |
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| Q |
119 |
gataatatgtttgctgcatactaactttaataaataatttaatatgataattatgacaaaacaattaaacttggatatattatatatagttagtgatcct |
218 |
Q |
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| T |
20326920 |
gataatatgtttgctgcatactaactttaataaataatttaatatgataattatgacaaaacaattaaacttggatatattatatatagttagtgatcct |
20327019 |
T |
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| Q |
219 |
agtttccccatatcactttcaccct |
243 |
Q |
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| T |
20327020 |
agtttccccatatcactttcaccct |
20327044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 7451474 - 7451389
Alignment:
| Q |
29 |
ggctctagcctgattgataggaattttagtcggataatcggagaaatgttttaggacaactcaccccgagcattccgtaaaatcaa |
114 |
Q |
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| T |
7451474 |
ggctctagcctgattgataggtattttagccggatagaaagaggaatgttttaagactactcaccccagccattccataaaatcaa |
7451389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 17659387 - 17659480
Alignment:
| Q |
73 |
aatgttttaggacaactcaccccgagcattccgtaaaatcaattcagataatatgtttgctgcatactaactttaataaataatttaatatgat |
166 |
Q |
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| T |
17659387 |
aatgtttcgggactactcaccccggggattccgtaaaatcaacctagataagttgtttgttccacactaacttttataaataattgaatatgat |
17659480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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