View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_69 (Length: 242)
Name: NF8186_low_69
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_69 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13212668 - 13212894
Alignment:
| Q |
1 |
caacacctcacattgaatcttccagaaccatcaatcgatctattgtatctcggaatagcgctgtttcttgtaggcgtcaccggcaacttctaccatcatt |
100 |
Q |
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| T |
13212668 |
caacacctcacatcgaatcttccagaaccatcaattgatctattgtatcctggaatcgcgctgtttcttgtaggcgtcaccggaaacttctaccatcatt |
13212767 |
T |
|
| Q |
101 |
atcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgattttgtgatatgtcctcattatcttttcgagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13212768 |
atcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgattttgtgatatgtcctcattatcttttcgagat |
13212867 |
T |
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| Q |
201 |
catagggttttatggattttccttcat |
227 |
Q |
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| T |
13212868 |
catagggttttatggattttccttcat |
13212894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 13165929 - 13166036
Alignment:
| Q |
82 |
ggcaacttctaccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgattttgtgatatgtc |
181 |
Q |
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||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
13165929 |
ggcaacttctaccatcattttcttctatcaaaattgagaggaaaaggtgaaaaagaatacaagattcctaaaggtggcttatttgggattgtgatatgtc |
13166028 |
T |
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| Q |
182 |
ctcattat |
189 |
Q |
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|||||||| |
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| T |
13166029 |
ctcattat |
13166036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 13188813 - 13188911
Alignment:
| Q |
91 |
taccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgattttgtgatatgtcctcattat |
189 |
Q |
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|||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
13188813 |
taccatcattttcttctatcaaaattgagaggaaaaggtgaaaaagaatacaagattcctaaaggtggcttatttgggattgtgatatgtcctcattat |
13188911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 13188707 - 13188811
Alignment:
| Q |
82 |
ggcaacttctaccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgattttgtgatatgtc |
181 |
Q |
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||||| || |||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
13188707 |
ggcaatttataccatcattttcttctatcaaaattgagaggaaaaggtgaaaaagaatacaagattcctaaaggtggcttatttgggattgtgatatgtc |
13188806 |
T |
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| Q |
182 |
ctcat |
186 |
Q |
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||||| |
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| T |
13188807 |
ctcat |
13188811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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